Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0443001 Rosa chinensis HOM05D008835 ORTHO05D011094 8.7e-110 401.7 440 100.0
Prupe.1G333800 Prunus persica HOM05D008835 ORTHO05D011094 5.8e-45 186.4 187 75.9
Dinv10471 Davidia involucrata HOM05D008835 ORTHO05D011094 2.1e-39 167.9 192 69.3
CANSAT01G3131 Cannabis sativa HOM05D008835 ORTHO05D011094 1.8e-38 164.9 194 46.9
Sc15g0000240 Simmondsia chinensis HOM05D008835 ORTHO05D011094 6.8e-38 162.9 193 54.4
Cpa.g.sc2.190 Carica papaya HOM05D008835 ORTHO05D011094 2.6e-37 161.0 186 54.8
CARHR144310 Cardamine hirsuta HOM05D008835 ORTHO05D011094 4.9e-36 156.8 441 55.8
RcHm_v2.0_Chr2g0123271 Rosa chinensis HOM05D008835 ORTHO05D011094 1.2e-34 152.1 398 65.8
Thhalv10003932m.g Eutrema salsugineum HOM05D008835 ORTHO05D011094 1.0e-33 149.1 192 50.0
Sp2g13190 Schrenkiella parvula HOM05D008835 ORTHO05D011094 1.0e-33 149.1 195 48.2
Aa31LG2G8150 Aethionema arabicum HOM05D008835 ORTHO05D011094 1.7e-33 148.3 192 50.0
AL5G10840 Arabidopsis lyrata HOM05D008835 ORTHO05D011094 3.9e-33 147.1 192 49.5
AT2G01740 Arabidopsis thaliana HOM05D008835 ORTHO05D011094 3.9e-33 147.1 192 49.5
C09p30430 Brassica napus HOM05D008835 ORTHO05D011094 3.6e-31 140.6 194 51.5
BolC9t55906H Brassica oleracea HOM05D008835 ORTHO05D011094 4.7e-31 140.2 194 51.5
BcaC04g21553 Brassica carinata HOM05D008835 ORTHO05D011094 6.2e-31 139.8 194 52.1
Hma1.2p1_0277F.1_g111660 Hydrangea macrophylla HOM05D008835 ORTHO05D011094 2.2e-28 131.3 191 63.9
Hma1.2p1_0277F.1_g111665 Hydrangea macrophylla HOM05D008835 ORTHO05D011094 2.2e-28 131.3 191 63.9
CSS0047579 Camellia sinensis var. sinensis HOM05D008835 ORTHO05D011094 4.1e-27 127.1 186 47.3
Cc11_g07380 Coffea canephora HOM05D008835 ORTHO05D011094 6.0e-26 123.2 189 39.2
BraA09t37964Z Brassica rapa HOM05D008835 ORTHO05D011094 1.0e-25 122.5 194 49.0
A09p23600 Brassica napus HOM05D008835 ORTHO05D011094 1.1e-24 119.0 194 48.5
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 2.8e-23 114.4 190 61.1
Carub.0005s0069 Capsella rubella HOM05D008835 ORTHO05D011094 2.6e-21 107.8 91 53.8
TAR374G1374 Trochodendron aralioides HOM05D008835 ORTHO05D011094 3.4e-21 107.5 187 59.4
CsaV3_5G014350 Cucumis sativus L. HOM05D008835 ORTHO05D011094 1.9e-19 101.7 189 37.6
Nn4g26594 Nelumbo nucifera HOM05D008835 ORTHO05D011094 7.1e-19 99.8 91 52.7
Gohir.D01G139800 Gossypium hirsutum HOM05D008835 ORTHO05D011094 9.3e-19 99.4 186 57.5
Gorai.002G171900 Gossypium raimondii HOM05D008835 ORTHO05D011094 9.3e-19 99.4 186 57.5
Thecc.02G293200 Theobroma cacao HOM05D008835 ORTHO05D030527 9.3e-19 99.4 109 50.5
Sed0018402 Sechium edule HOM05D008835 ORTHO05D011094 1.2e-18 99.0 188 54.3
Lj3P864T25 Lonicera japonica HOM05D008835 ORTHO05D011094 2.3e-17 94.7 82 59.8
Gohir.A01G146600 Gossypium hirsutum HOM05D008835 ORTHO05D011094 5.6e-16 90.1 186 55.4
ATR0753G127 Amborella trichopoda HOM05D008835 ORTHO05D011094 9.0e-14 82.8 91 48.4
Actinidia34037 Actinidia chinensis HOM05D008835 ORTHO05D011094 3.2e-11 74.3 51 58.8
ClCG07G005540 Citrullus lanatus HOM05D008835 ORTHO05D011094 6.0e-10 70.1 50 56.0
Oeu044008.1 Olea europaea HOM05D008835 ORTHO05D011094 5.6e-08 63.5 51 56.9
RcHm_v2.0_Chr4g0442961 Rosa chinensis HOM05D026851 ORTHO05D030527 5.6e-08 63.5 45 77.8
RcHm_v2.0_Chr4g0442881 Rosa chinensis HOM05D026851 ORTHO05D030527 7.4e-08 63.2 45 75.6
Cc11_g07320 Coffea canephora HOM05D008835 ORTHO05D011094 9.0e-06 56.2 41 51.2


User provided reference genes

Program Settings