Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0442111 Rosa chinensis HOM05D003983 ORTHO05D004562 3.3e-18 94.0 47 100.0
RcHm_v2.0_Chr3g0486701 Rosa chinensis HOM05D003983 ORTHO05D004562 7.4e-18 92.8 46 97.8
RcHm_v2.0_Chr3g0486721 Rosa chinensis HOM05D003983 ORTHO05D004562 7.4e-18 92.8 46 97.8
RcHm_v2.0_Chr4g0388411 Rosa chinensis HOM05D003983 ORTHO05D004562 7.4e-18 92.8 46 97.8
RcHm_v2.0_Chr4g0388431 Rosa chinensis HOM05D003983 ORTHO05D004562 7.4e-18 92.8 46 97.8
RcHm_v2.0_Chr4g0388381 Rosa chinensis HOM05D003983 ORTHO05D004562 3.7e-17 90.5 46 95.7
FvH4_4g33060 Fragaria vesca HOM05D003983 ORTHO05D004562 8.2e-17 89.4 47 93.6
FAN07G1936 Fragaria x ananassa HOM05D003983 ORTHO05D004562 8.2e-17 89.4 47 93.6
FAN12G1558 Fragaria x ananassa HOM05D003983 ORTHO05D004562 8.2e-17 89.4 47 93.6
FAN17G0269 Fragaria x ananassa HOM05D003983 ORTHO05D004562 8.2e-17 89.4 47 93.6
FAN22G1456 Fragaria x ananassa HOM05D003983 ORTHO05D004562 8.2e-17 89.4 47 93.6
Prupe.1G337100 Prunus persica HOM05D003983 ORTHO05D004562 2.4e-16 87.8 47 89.4
MD13G1016400 Malus domestica HOM05D003983 ORTHO05D004562 9.1e-16 85.9 47 87.2
Potri.010G102200 Populus trichocarpa HOM05D003983 ORTHO05D004562 1.0e-14 82.4 47 76.6
MD16G1013900 Malus domestica HOM05D003983 ORTHO05D004562 1.7e-14 81.6 47 83.0
Dinv05685 Davidia involucrata HOM05D003983 ORTHO05D004562 2.2e-14 81.3 47 80.9
TAR622G0111 Trochodendron aralioides HOM05D003983 ORTHO05D004562 5.0e-14 80.1 47 78.7
TWI74G1079 Tripterygium wilfordii HOM05D003983 ORTHO05D004562 6.5e-14 79.7 48 81.2
AL1G40150 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 8.5e-14 79.3 43 81.4
AT5G57890 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 8.5e-14 79.3 43 81.4
Carub.0001s2535 Capsella rubella HOM05D003983 ORTHO05D004562 8.5e-14 79.3 43 81.4
CARHR026340 Cardamine hirsuta HOM05D003983 ORTHO05D004562 8.5e-14 79.3 43 81.4
Hma1.2p1_0037F.1_g023780 Hydrangea macrophylla HOM05D003983 ORTHO05D004562 8.5e-14 79.3 47 78.7
Aqoxy3G04109 Aquilegia oxysepala HOM05D003983 ORTHO05D004562 1.5e-13 78.6 47 78.7
AT1G25220 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 1.5e-13 78.6 43 79.1
Lj2g0017484 Lotus japonicus HOM05D003983 ORTHO05D004562 1.5e-13 78.6 42 85.7
THA.LOC104809791 Tarenaya hassleriana HOM05D003983 ORTHO05D004562 1.5e-13 78.6 44 77.3
GSVIVG01011602001 Vitis vinifera HOM05D003983 ORTHO05D004562 1.5e-13 78.6 47 78.7
BcaB03g12041 Brassica carinata HOM05D003983 ORTHO05D004562 1.9e-13 78.2 45 75.6
Manes.17G087200 Manihot esculenta HOM05D003983 ORTHO05D004562 1.9e-13 78.2 47 76.6
Oeu044076.2 Olea europaea HOM05D003983 ORTHO05D004562 1.9e-13 78.2 44 81.8
QL03p038834 Quercus lobata HOM05D003983 ORTHO05D004562 1.9e-13 78.2 46 76.1
Sabra08G0105500 Salix brachista HOM05D003983 ORTHO05D004562 1.9e-13 78.2 46 73.9
AL4G18740 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 2.5e-13 77.8 43 81.4
Dinv14372 Davidia involucrata HOM05D003983 ORTHO05D004562 2.5e-13 77.8 47 78.7
Thecc.02G305000 Theobroma cacao HOM05D003983 ORTHO05D004562 2.5e-13 77.8 48 81.2
AT1G24807 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 3.2e-13 77.4 43 76.7
AT1G24909 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 3.2e-13 77.4 43 76.7
AT1G25083 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 3.2e-13 77.4 43 76.7
AT1G25155 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 3.2e-13 77.4 43 76.7
Cfa015064 Carpinus fangiana HOM05D003983 ORTHO05D004562 3.2e-13 77.4 47 76.6
AL5G11470 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 4.2e-13 77.0 43 81.4
CiPaw.06G059200 Carya illinoinensis HOM05D003983 ORTHO05D004562 4.2e-13 77.0 44 77.3
Cc00_g17040 Coffea canephora HOM05D003983 ORTHO05D004562 4.2e-13 77.0 47 74.5
Cc11_g05880 Coffea canephora HOM05D003983 ORTHO05D004562 4.2e-13 77.0 47 74.5
TWI56G0668 Tripterygium wilfordii HOM05D003983 ORTHO05D004562 4.2e-13 77.0 47 76.6
CANSAT78G2066 Cannabis sativa HOM05D003983 ORTHO05D004562 5.5e-13 76.6 47 72.3
CDE11G0429 Ceratophyllum demersum HOM05D003983 ORTHO05D004562 5.5e-13 76.6 43 81.4
Thhalv10008447m.g Eutrema salsugineum HOM05D003983 ORTHO05D004562 5.5e-13 76.6 44 75.0
Manes.15G137900 Manihot esculenta HOM05D003983 ORTHO05D004562 5.5e-13 76.6 47 72.3
Solyc12g010180.2 Solanum lycopersicum HOM05D003983 ORTHO05D004562 5.5e-13 76.6 48 81.2
Sopen12g005050 Solanum pennellii HOM05D003983 ORTHO05D004562 5.5e-13 76.6 48 81.2
BcaC05g26495 Brassica carinata HOM05D003983 ORTHO05D004562 7.2e-13 76.3 43 76.7
A09p39040 Brassica napus HOM05D003983 ORTHO05D004562 7.2e-13 76.3 43 76.7
C05p25470 Brassica napus HOM05D003983 ORTHO05D004562 7.2e-13 76.3 43 76.7
BraA08t34625Z Brassica rapa HOM05D003983 ORTHO05D004562 7.2e-13 76.3 43 76.7
BraA09t39404Z Brassica rapa HOM05D003983 ORTHO05D004562 7.2e-13 76.3 43 76.7
MELO3C018290.2 Cucumis melo HOM05D003983 ORTHO05D004562 7.2e-13 76.3 45 80.0
Duzib248G0975 Durio zibethinus HOM05D003983 ORTHO05D004562 7.2e-13 76.3 48 77.1
Duzib268G0992 Durio zibethinus HOM05D003983 ORTHO05D004562 7.2e-13 76.3 48 77.1
Glyma.16G058800 Glycine max HOM05D003983 ORTHO05D004562 7.2e-13 76.3 42 83.3
Potri.008G138800 Populus trichocarpa HOM05D003983 ORTHO05D004562 7.2e-13 76.3 47 72.3
Sp1g23070 Schrenkiella parvula HOM05D003983 ORTHO05D004562 7.2e-13 76.3 43 76.7
Sed0000196 Sechium edule HOM05D003983 ORTHO05D004562 7.2e-13 76.3 43 81.4
A08p26790 Brassica napus HOM05D003983 ORTHO05D004562 9.4e-13 75.9 43 76.7
C03p73170 Brassica napus HOM05D003983 ORTHO05D004562 9.4e-13 75.9 43 76.7
Ca_26339_v3 Cicer arietinum L. HOM05D003983 ORTHO05D004562 9.4e-13 75.9 44 81.8
ClCG07G006850 Citrullus lanatus HOM05D003983 ORTHO05D004562 9.4e-13 75.9 45 80.0
Peaxi162Scf00062g00418 Petunia axillaris HOM05D003983 ORTHO05D004562 9.4e-13 75.9 48 81.2
Ca_29558_v3 Cicer arietinum L. HOM05D003983 ORTHO05D004562 1.2e-12 75.5 44 81.8
CsaV3_5G015330 Cucumis sativus L. HOM05D003983 ORTHO05D004562 1.2e-12 75.5 45 80.0
Lalb_Chr07g0187831 Lupinus albus HOM05D003983 ORTHO05D004562 1.2e-12 75.5 42 83.3
Aa31LG7G9320 Aethionema arabicum HOM05D003983 ORTHO05D004562 1.6e-12 75.1 43 74.4
BolC5t31275H Brassica oleracea HOM05D003983 ORTHO05D004562 1.6e-12 75.1 43 74.4
Nn4g24498 Nelumbo nucifera HOM05D003983 ORTHO05D004562 1.6e-12 75.1 46 71.7
Atru.chr11.745 Acer truncatum HOM05D003983 ORTHO05D004562 2.1e-12 74.7 48 75.0
CAN.G551.33 Capsicum annuum HOM05D003983 ORTHO05D004562 2.1e-12 74.7 44 79.5
Cpa.g.sc2.136 Carica papaya HOM05D003983 ORTHO05D004562 2.1e-12 74.7 47 70.2
COL.COLO4_27591 Corchorus olitorius HOM05D003983 ORTHO05D004562 2.1e-12 74.7 48 77.1
Eucgr.A00016 Eucalyptus grandis HOM05D003983 ORTHO05D004562 2.1e-12 74.7 47 72.3
Lj3C860T0 Lonicera japonica HOM05D003983 ORTHO05D004562 2.1e-12 74.7 47 70.2
Rhsim09G0086300 Rhododendron simsii HOM05D003983 ORTHO05D004562 2.1e-12 74.7 47 74.5
SGA_v2.0_scaffold23G10117 Striga asiatica HOM05D003983 ORTHO05D004562 2.1e-12 74.7 47 72.3
BcaB03g14021 Brassica carinata HOM05D001297 ORTHO05D001135 2.7e-12 74.3 43 74.4
BcaC01g01671 Brassica carinata HOM05D003983 ORTHO05D004562 2.7e-12 74.3 43 74.4
BcaC06g35239 Brassica carinata HOM05D003983 ORTHO05D004562 2.7e-12 74.3 43 74.4
C07p18350 Brassica napus HOM05D003983 ORTHO05D004562 2.7e-12 74.3 43 74.4
BolC3t19615H Brassica oleracea HOM05D003983 ORTHO05D004562 2.7e-12 74.3 43 74.4
BolC7t42345H Brassica oleracea HOM05D003983 ORTHO05D004562 2.7e-12 74.3 43 74.4
Medtr1g033480 Medicago truncatula HOM05D003983 ORTHO05D004562 2.7e-12 74.3 42 81.0
PSO356G0033 Papaver somniferum HOM05D003983 ORTHO05D004562 2.7e-12 74.3 42 78.6
PSO675G6890 Papaver somniferum HOM05D003983 ORTHO05D004562 2.7e-12 74.3 42 78.6
MSTRG.13642 Avicennia marina HOM05D003983 ORTHO05D004562 3.6e-12 73.9 42 78.6
ClCG07G006870 Citrullus lanatus HOM05D003983 ORTHO05D004562 3.6e-12 73.9 43 79.1
Migut.E00508 Erythranthe guttata HOM05D003983 ORTHO05D004562 3.6e-12 73.9 44 77.3
Gohir.A12G154000 Gossypium hirsutum HOM05D003983 ORTHO05D004562 3.6e-12 73.9 41 80.5
Gohir.D12G157100 Gossypium hirsutum HOM05D003983 ORTHO05D004562 3.6e-12 73.9 41 80.5
Gorai.008G169900 Gossypium raimondii HOM05D003983 ORTHO05D004562 3.6e-12 73.9 41 80.5
Lalb_Chr12g0209351 Lupinus albus HOM05D003983 ORTHO05D004562 3.6e-12 73.9 42 81.0
Nitab4.5_0001478g0080 Nicotiana tabacum HOM05D003983 ORTHO05D004562 3.6e-12 73.9 48 75.0
Nitab4.5_0002315g0030 Nicotiana tabacum HOM05D003983 ORTHO05D004562 3.6e-12 73.9 48 75.0
arahy.Tifrunner.gnm1.ann1.H0K2UA Arachis hypogaea HOM05D003983 ORTHO05D004562 4.7e-12 73.6 42 76.2
arahy.Tifrunner.gnm1.ann1.L1YRVI Arachis hypogaea HOM05D003983 ORTHO05D004562 4.7e-12 73.6 42 76.2
HanXRQChr08g0224861 Helianthus annuus HOM05D003983 ORTHO05D004562 4.7e-12 73.6 47 74.5
Ciclev10016176m.g Citrus clementina HOM05D003983 ORTHO05D004562 6.1e-12 73.2 48 70.8
Actinidia12430 Actinidia chinensis HOM05D003983 ORTHO05D004562 1.0e-11 72.4 47 70.2
CDE05G2824 Ceratophyllum demersum HOM05D003983 ORTHO05D004562 1.0e-11 72.4 43 76.7
Phvul.003G014300 Phaseolus vulgaris HOM05D003983 ORTHO05D004562 1.0e-11 72.4 42 78.6
arahy.Tifrunner.gnm1.ann1.2I20T3 Arachis hypogaea HOM05D003983 ORTHO05D004562 1.4e-11 72.0 42 73.8
TPR.G34556 Trifolium pratense HOM05D003983 ORTHO05D004562 1.4e-11 72.0 42 78.6
SalBow5G2331 Salvia bowleyana HOM05D003983 ORTHO05D004562 1.8e-11 71.6 45 68.9
SalBow5G2576 Salvia bowleyana HOM05D003983 ORTHO05D004562 1.8e-11 71.6 45 68.9
BcaC05g26695 Brassica carinata HOM05D003983 ORTHO05D004562 3.0e-11 70.9 39 76.9
PSO339G3678 Papaver somniferum HOM05D003983 ORTHO05D004562 3.0e-11 70.9 43 72.1
VMungo1215G1104 Vigna mungo HOM05D003983 ORTHO05D004562 3.0e-11 70.9 41 78.0
Lj6A732T67 Lonicera japonica HOM05D003983 ORTHO05D004562 4.0e-11 70.5 48 70.8
unitig_699.g19470 Utricularia gibba HOM05D003983 ORTHO05D004562 5.2e-11 70.1 45 68.9
CSS0004353 Camellia sinensis var. sinensis HOM05D003983 ORTHO05D004562 6.8e-11 69.7 48 72.9
Gohir.A03G112800 Gossypium hirsutum HOM05D003983 ORTHO05D004562 6.8e-11 69.7 42 76.2
Gohir.D02G137151 Gossypium hirsutum HOM05D003983 ORTHO05D004562 6.8e-11 69.7 42 76.2
Gorai.005G153300 Gossypium raimondii HOM05D003983 ORTHO05D004562 6.8e-11 69.7 42 76.2
Ah.13g077910 Amaranthus hybridus HOM05D007596 ORTHO05D004562 1.2e-10 68.9 46 65.2
ATR0598G020 Amborella trichopoda HOM05D003983 ORTHO05D004562 1.2e-10 68.9 42 71.4
ECA246G0293 Erigeron canadensis HOM05D003983 ORTHO05D004562 1.2e-10 68.9 44 72.7
Os03g0718000 Oryza sativa ssp. japonica HOM05D003983 ORTHO05D004562 1.2e-10 68.9 42 71.4
HanXRQChr12g0366151 Helianthus annuus HOM05D003983 ORTHO05D004562 1.5e-10 68.6 44 72.7
Os04g0463500 Oryza sativa ssp. japonica HOM05D003983 ORTHO05D004562 1.5e-10 68.6 43 72.1
ECA233G0760 Erigeron canadensis HOM05D003983 ORTHO05D004562 2.0e-10 68.2 47 70.2
Zm00001eb066090 Zea mays HOM05D003983 ORTHO05D004562 2.6e-10 67.8 43 72.1
Zm00001eb080510 Zea mays HOM05D003983 ORTHO05D004562 3.4e-10 67.4 43 69.8
Zm00001eb424380 Zea mays HOM05D003983 ORTHO05D004562 3.4e-10 67.4 43 69.8
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 4.4e-10 67.0 47 57.4
ATR0100G040 Amborella trichopoda HOM05D003983 ORTHO05D004562 5.7e-10 66.6 46 63.0
Zm00001eb055320 Zea mays HOM05D003983 ORTHO05D004562 1.3e-09 65.5 44 65.9
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 2.8e-09 64.3 41 63.4
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 2.8e-09 64.3 40 62.5
Gohir.D13G028101 Gossypium hirsutum HOM05D003983 ORTHO05D004562 4.8e-09 63.5 48 66.7
Gorai.013G032100 Gossypium raimondii HOM05D003983 ORTHO05D004562 4.8e-09 63.5 48 66.7
SEGI_15310 Sequoiadendron giganteum HOM05D003983 ORTHO05D004562 6.3e-09 63.2 43 60.5
AL5G19970 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 1.1e-08 62.4 42 66.7
AUR62018550 Chenopodium quinoa HOM05D003983 ORTHO05D004562 2.4e-08 61.2 40 60.0
AUR62020869 Chenopodium quinoa HOM05D003983 ORTHO05D004562 2.4e-08 61.2 40 60.0
Mapoly0037s0136 Marchantia polymorpha HOM05D003983 ORTHO05D004562 3.1e-08 60.8 42 64.3
Zm00001eb232460 Zea mays HOM05D003983 ORTHO05D004562 4.1e-08 60.5 43 62.8
Cre14.g620300 Chlamydomonas reinhardtii HOM05D003983 ORTHO05D004562 1.6e-07 58.5 37 70.3
MCO13G279 Micromonas commoda HOM05D003983 ORTHO05D004562 4.5e-07 57.0 37 70.3
PGR102G0108 Punica granatum HOM05D003983 ORTHO05D004562 4.5e-07 57.0 36 69.4
SMO358G0613 Selaginella moellendorffii HOM05D003983 ORTHO05D004562 5.9e-07 56.6 46 52.2
Lsat_1_v5_gn_8_34800 Lactuca sativa HOM05D003983 ORTHO05D004562 7.7e-07 56.2 30 83.3
Pp3c3_33470 Physcomitrium patens HOM05D003983 ORTHO05D004562 7.7e-07 56.2 42 57.1
Nitab4.5_0000283g0460 Nicotiana tabacum HOM05D003983 ORTHO05D004562 1.0e-06 55.8 31 80.6
Sabra10G0075000 Salix brachista HOM05D003983 ORTHO05D004562 1.3e-06 55.5 34 70.6
Pp3c10_17060 Physcomitrium patens HOM05D003983 ORTHO05D004562 1.7e-06 55.1 42 57.1
Ciclev10030067m.g Citrus clementina HOM05D003983 ORTHO05D004562 2.2e-06 54.7 34 67.6
Ciclev10030118m.g Citrus clementina HOM05D003983 ORTHO05D004562 5.0e-06 53.5 28 78.6


User provided reference genes

Program Settings