Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 4.2e-94 348.2 174 100.0
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.8e-82 308.9 175 90.9
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.4e-81 305.8 162 95.1
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 2.6e-80 302.4 177 87.0
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 5.8e-80 301.2 161 94.4
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.4e-78 296.6 161 93.2
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.3e-76 289.3 155 94.2
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 7.4e-75 284.3 180 82.8
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 3.1e-73 278.9 174 79.9
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 5.3e-73 278.1 180 79.4
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 7.6e-72 274.2 181 78.5
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 2.9e-71 272.3 182 76.9
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 1.4e-70 270.0 179 77.1
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 1.4e-70 270.0 182 77.5
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 3.2e-70 268.9 155 84.5
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 3.2e-70 268.9 172 80.8
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 4.2e-70 268.5 174 78.7
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 4.2e-70 268.5 174 78.7
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 9.3e-70 267.3 176 77.8
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 2.1e-69 266.2 174 76.4
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 4.6e-69 265.0 174 77.0
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 1.0e-68 263.8 174 77.0
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 1.3e-68 263.5 180 75.6
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 3.0e-68 262.3 172 76.2
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 3.0e-68 262.3 179 75.4
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 1.1e-67 260.4 176 76.1
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 1.5e-67 260.0 176 75.6
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 3.3e-67 258.8 156 79.5
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 7.4e-67 257.7 165 78.2
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 7.4e-67 257.7 177 76.8
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 1.3e-66 256.9 174 76.4
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 1.3e-66 256.9 172 77.3
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 1.3e-66 256.9 180 73.9
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 2.8e-66 255.8 176 76.1
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 3.7e-66 255.4 179 73.7
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 8.2e-66 254.2 153 79.7
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 8.2e-66 254.2 153 79.7
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 8.2e-66 254.2 179 72.6
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 8.2e-66 254.2 169 76.3
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 2.4e-65 252.7 162 77.8
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 2.4e-65 252.7 163 78.5
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 4.1e-65 251.9 180 73.3
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 5.3e-65 251.5 162 77.2
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 5.3e-65 251.5 166 78.3
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 9.1e-65 250.8 166 78.3
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 1.2e-64 250.4 173 74.6
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 2.6e-64 249.2 168 75.0
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 3.4e-64 248.8 161 77.6
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 3.4e-64 248.8 161 77.6
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 7.7e-64 247.7 169 74.0
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 1.3e-63 246.9 179 73.2
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 1.7e-63 246.5 169 74.6
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 1.7e-63 246.5 179 72.6
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 2.2e-63 246.1 153 81.7
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 2.9e-63 245.7 171 73.7
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 5.0e-63 245.0 175 73.7
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 5.0e-63 245.0 179 72.6
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 6.5e-63 244.6 159 76.1
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 1.1e-62 243.8 176 75.0
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 1.4e-62 243.4 174 72.4
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 5.5e-62 241.5 166 74.7
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 5.5e-62 241.5 166 74.1
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 7.2e-62 241.1 175 72.6
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 7.2e-62 241.1 137 87.6
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 7.2e-62 241.1 137 87.6
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 9.4e-62 240.7 174 72.4
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 9.4e-62 240.7 180 71.1
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 1.2e-61 240.4 171 74.3
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 1.2e-61 240.4 172 72.7
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 1.6e-61 240.0 175 72.0
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 1.6e-61 240.0 158 78.5
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 2.1e-61 239.6 172 71.5
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 2.7e-61 239.2 169 74.6
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 3.6e-61 238.8 176 71.0
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 6.1e-61 238.0 178 71.3
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 7.9e-61 237.7 169 73.4
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 7.9e-61 237.7 174 74.1
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 7.9e-61 237.7 174 71.8
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 1.4e-60 236.9 162 73.5
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.4e-60 236.9 169 72.2
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.4e-60 236.9 171 73.1
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 2.3e-60 236.1 154 78.6
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 3.9e-60 235.3 178 72.5
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 6.7e-60 234.6 178 71.9
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 1.1e-59 233.8 164 74.4
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 1.7e-58 229.9 174 69.5
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 3.7e-58 228.8 175 69.7
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 1.1e-57 227.3 128 86.7
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 2.0e-56 223.0 170 70.6
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 3.8e-55 218.8 178 66.9
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 4.2e-54 215.3 173 67.1
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 2.1e-53 213.0 142 74.6
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 1.4e-52 210.3 119 83.2
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 6.7e-52 208.0 119 82.4
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 5.7e-51 204.9 173 65.9
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 9.7e-51 204.1 137 78.1
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 3.5e-48 195.7 132 68.9
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 4.5e-48 195.3 169 58.6
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 1.7e-47 193.4 161 60.2
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 3.8e-47 192.2 113 79.6
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 1.1e-46 190.7 114 78.9
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 7.2e-46 188.0 113 79.6
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 3.6e-45 185.7 173 59.0
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 8.0e-45 184.5 121 70.2
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 3.0e-44 182.6 137 66.4
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 1.9e-38 163.3 132 65.2
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 2.5e-38 162.9 171 55.0
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 1.0e-36 157.5 109 65.1
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 4.5e-24 115.5 144 39.6
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 4.4e-19 99.0 113 42.5
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 9.2e-17 91.3 52 78.8
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 5.9e-16 88.6 106 43.4
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 3.3e-14 82.8 126 34.1


User provided reference genes

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