Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.2e-171 605.5 308 100.0
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.5e-146 522.3 305 88.5
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.6e-145 519.6 307 86.6
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.6e-143 512.3 308 86.7
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.1e-136 490.3 309 84.5
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.9e-122 443.0 305 77.4
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 5.2e-120 434.9 321 73.2
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.2e-111 407.1 289 71.6
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.5e-108 395.6 291 69.8
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.0e-107 392.5 286 70.3
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 5.1e-107 391.7 243 81.5
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 2.8e-105 386.0 270 71.5
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.4e-104 382.9 299 66.2
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 6.9e-104 381.3 293 66.9
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 4.9e-102 375.2 305 65.2
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 4.9e-102 375.2 310 63.9
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.9e-101 373.2 314 61.5
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.9e-101 373.2 305 64.3
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.1e-100 369.8 313 62.6
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 3.5e-100 369.0 261 70.1
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.3e-99 367.1 298 64.4
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 8.7e-99 364.4 314 60.2
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.1e-98 364.0 293 63.1
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.6e-98 361.7 293 61.4
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.3e-97 360.5 261 67.0
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 3.1e-96 355.9 304 63.2
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 5.3e-96 355.1 266 65.8
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 6.9e-96 354.8 300 59.7
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.2e-95 354.0 304 60.9
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.2e-95 354.0 322 59.6
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.5e-95 353.6 264 67.4
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.4e-95 352.4 310 59.7
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.8e-95 351.7 284 64.4
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 7.6e-95 351.3 261 67.4
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.3e-94 350.5 304 62.5
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 3.8e-94 349.0 296 61.5
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 6.4e-94 348.2 267 65.9
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 2.4e-93 346.3 318 59.7
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 4.2e-93 345.5 301 59.8
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.6e-92 343.6 291 61.5
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.7e-92 342.8 290 62.8
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 4.6e-92 342.0 261 66.3
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 6.0e-92 341.7 291 58.8
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.8e-91 340.1 302 60.3
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 3.0e-91 339.3 263 63.5
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.9e-91 339.0 303 59.7
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 3.9e-91 339.0 266 63.2
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.1e-90 337.4 287 61.7
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 1.1e-90 337.4 361 53.2
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.1e-89 333.2 285 59.6
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.1e-89 333.2 261 62.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.1e-89 333.2 261 62.8
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 3.7e-89 332.4 278 60.8
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 3.7e-89 332.4 275 62.5
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 3.7e-89 332.4 266 61.7
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 3.7e-89 332.4 244 65.2
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.4e-88 330.5 262 62.2
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.2e-87 327.4 299 58.5
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.2e-87 327.4 309 55.3
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.5e-87 327.0 316 55.4
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 2.0e-87 326.6 295 56.6
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 4.5e-87 325.5 221 69.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 7.6e-87 324.7 218 70.6
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.7e-86 323.6 260 63.1
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.2e-86 323.2 269 59.9
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.4e-85 320.5 221 69.7
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.2e-85 318.9 220 67.7
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 5.5e-85 318.5 336 51.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 7.1e-85 318.2 220 68.2
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.2e-84 317.4 336 51.2
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.6e-84 317.0 338 51.5
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 2.1e-84 316.6 302 53.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.1e-84 316.6 402 48.3
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 8.7e-83 311.2 295 55.6
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.7e-82 308.5 333 52.6
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.8e-81 306.2 221 66.5
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 4.8e-81 305.4 217 66.8
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.4e-80 303.1 258 58.9
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 4.1e-80 302.4 260 56.2
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 6.9e-80 301.6 259 56.4
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.6e-79 299.7 302 55.3
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.3e-78 297.4 369 47.7
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.3e-78 297.4 287 52.6
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.7e-78 297.0 302 54.3
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 2.9e-78 296.2 270 57.8
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.8e-78 295.8 294 53.7
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 3.8e-78 295.8 269 58.7
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.5e-78 295.0 271 56.5
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.5e-78 295.0 275 58.2
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-77 294.3 277 57.0
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.5e-77 293.1 299 54.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 2.7e-76 289.7 272 52.2
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 2.7e-76 289.7 258 57.4
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 4.6e-76 288.9 296 52.0
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 3.9e-75 285.8 292 52.4
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.1e-75 285.4 326 50.6
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.1e-74 284.3 305 48.9
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-74 283.9 290 52.4
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.5e-74 283.1 291 51.9
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.5e-74 283.1 259 56.4
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 2.5e-74 283.1 259 56.4
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 4.3e-74 282.3 259 56.4
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.3e-74 282.3 261 52.1
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 7.4e-74 281.6 259 55.2
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 7.4e-74 281.6 281 53.0
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.3e-73 280.8 291 51.9
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.3e-73 280.8 281 53.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.3e-73 280.8 308 49.4
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.8e-73 279.6 201 68.2
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 4.8e-73 278.9 287 51.2
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-72 277.7 299 51.5
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.1e-72 277.7 299 51.5
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 5.3e-72 275.4 201 66.7
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-71 273.1 235 58.7
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.6e-71 273.1 221 58.8
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.4e-71 272.7 295 50.8
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.0e-70 271.2 284 51.8
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.5e-69 266.5 218 61.0
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 4.2e-69 265.8 232 59.1
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 2.3e-67 260.0 262 52.3
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.3e-67 260.0 261 50.6
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 3.0e-67 259.6 217 57.1
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 6.3e-65 251.9 262 50.8
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.1e-61 241.1 200 61.5
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.9e-61 240.4 226 56.6
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.6e-60 236.1 214 59.3
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 5.2e-59 232.3 217 58.1
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 3.3e-58 229.6 205 60.0
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 7.4e-58 228.4 215 58.1
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 9.7e-58 228.0 205 59.0
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 9.7e-58 228.0 170 70.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 9.7e-58 228.0 205 60.0
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.3e-57 227.6 214 56.5
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.7e-57 227.3 214 56.1
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 2.8e-57 226.5 205 59.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.1e-56 222.6 214 57.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.2e-55 221.1 207 58.0
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 6.5e-54 215.3 161 62.7
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 4.0e-51 206.1 302 43.0
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 6.7e-51 205.3 170 62.9
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.4e-48 197.6 226 50.9
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 5.9e-47 192.2 214 45.3
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.8e-46 189.5 236 49.2
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 6.5e-46 188.7 135 65.9
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 3.4e-42 176.4 169 53.3
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 4.8e-41 172.6 132 62.9
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 4.1e-40 169.5 127 63.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.0e-40 168.7 140 60.0
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 8.0e-36 155.2 127 62.2
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 8.0e-36 155.2 151 53.6
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.4e-35 154.5 271 37.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 5.2e-35 152.5 122 63.1
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 2.0e-34 150.6 133 60.9
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 7.5e-34 148.7 137 59.1
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 4.9e-33 146.0 117 61.5
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 4.9e-33 146.0 227 38.3
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.6e-31 141.0 136 50.7
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.1e-29 134.8 180 45.0
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 8.0e-28 128.6 195 41.5
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.6e-26 123.6 251 33.1
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.0e-22 109.4 83 61.4
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.1e-20 104.0 76 61.8
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.1e-19 101.7 89 56.2
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 4.0e-19 99.8 83 55.4
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 4.4e-18 96.3 89 48.3
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.5e-15 86.7 85 54.1
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.1e-12 77.4 174 37.9
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 2.9e-09 67.0 142 33.8
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 3.7e-09 66.6 62 53.2
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 4.9e-09 66.2 74 52.7
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 6.4e-09 65.9 164 30.5
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.9e-08 64.3 180 26.1
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 3.5e-07 60.1 128 35.2
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.0e-07 59.3 59 52.5


User provided reference genes

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