Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 2.3e-59 232.3 136 100.0
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.1e-56 223.4 115 97.4
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 4.4e-55 218.0 115 93.9
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 9.9e-55 216.9 115 93.9
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.8e-54 214.9 122 91.0
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.9e-53 212.6 115 91.3
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 3.2e-53 211.8 117 90.6
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 9.3e-53 210.3 117 88.0
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.6e-52 209.5 115 90.4
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.6e-52 209.5 115 89.6
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 2.1e-52 209.1 117 88.9
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.1e-52 209.1 117 88.0
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 2.7e-52 208.8 117 88.9
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 4.6e-52 208.0 115 90.4
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 6.0e-52 207.6 115 88.7
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 7.8e-52 207.2 117 88.0
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 7.8e-52 207.2 117 87.2
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.0e-51 206.8 115 89.6
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.0e-51 206.8 117 87.2
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 1.7e-51 206.1 115 88.7
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.3e-51 205.7 115 87.0
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.3e-51 205.7 115 87.0
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 2.3e-51 205.7 115 87.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 3.0e-51 205.3 115 87.8
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 5.1e-51 204.5 115 86.1
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 1.9e-50 202.6 115 87.8
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 4.3e-50 201.4 130 80.8
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 4.3e-50 201.4 130 80.8
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 5.6e-50 201.1 118 83.9
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 5.6e-50 201.1 115 84.3
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 9.6e-50 200.3 114 84.2
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 2.1e-49 199.1 117 86.3
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 3.6e-49 198.4 117 83.8
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 4.8e-49 198.0 117 86.3
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 6.2e-49 197.6 117 81.2
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 1.1e-48 196.8 116 85.3
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.1e-48 196.8 116 85.3
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.4e-48 196.4 140 72.9
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.4e-48 196.4 140 72.9
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.4e-48 196.4 115 82.6
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 1.8e-48 196.1 117 83.8
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 2.4e-48 195.7 117 83.8
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 2.4e-48 195.7 117 83.8
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 2.4e-48 195.7 115 83.5
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 3.1e-48 195.3 115 84.3
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 4.0e-48 194.9 117 80.3
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 5.3e-48 194.5 116 84.5
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 6.9e-48 194.1 117 87.2
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 2.6e-47 192.2 116 82.8
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 2.6e-47 192.2 114 86.8
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 4.5e-47 191.4 117 79.5
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 7.6e-47 190.7 115 80.0
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 7.6e-47 190.7 117 82.9
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 2.2e-46 189.1 117 80.3
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 2.2e-46 189.1 126 78.6
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 3.8e-46 188.3 117 81.2
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 6.4e-46 187.6 115 81.7
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 8.4e-46 187.2 117 82.1
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.1e-45 186.8 113 82.3
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 3.2e-45 185.3 113 83.2
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 4.2e-45 184.9 117 79.5
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 5.4e-45 184.5 123 78.9
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 5.4e-45 184.5 117 81.2
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 9.3e-45 183.7 116 79.3
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 9.3e-45 183.7 117 79.5
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.2e-44 183.3 123 76.4
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.2e-44 183.3 117 80.3
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.6e-44 183.0 116 80.2
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 2.1e-44 182.6 113 82.3
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 2.1e-44 182.6 121 79.3
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 3.5e-44 181.8 130 74.6
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 7.9e-44 180.6 120 79.2
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.9e-44 180.6 115 83.5
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.0e-43 180.3 117 78.6
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 3.9e-43 178.3 128 72.7
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 5.1e-43 177.9 127 74.8
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.1e-43 177.9 117 77.8
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 6.7e-43 177.6 115 82.6
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.3e-41 173.3 115 73.9
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 2.1e-41 172.6 115 77.4
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.8e-40 169.5 115 71.3
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.8e-40 169.5 151 61.6
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 5.3e-40 167.9 117 72.6
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 5.3e-40 167.9 115 75.7
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 9.0e-40 167.2 108 82.4
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 1.2e-39 166.8 115 74.8
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 2.0e-39 166.0 107 77.6
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 2.6e-39 165.6 115 73.9
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 5.8e-39 164.5 117 73.5
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 5.8e-39 164.5 117 76.1
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.8e-38 161.8 172 54.7
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 4.9e-38 161.4 117 68.4
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 8.4e-38 160.6 116 67.2
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.9e-37 159.5 131 66.4
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 2.4e-37 159.1 115 67.8
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.6e-36 156.4 114 67.5
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 2.3e-35 152.5 117 65.0
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 5.1e-35 151.4 116 66.4
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 5.6e-34 147.9 117 70.1
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 7.4e-34 147.5 112 70.5
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 7.4e-34 147.5 117 65.8
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 1.3e-33 146.7 156 55.8
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 2.8e-33 145.6 112 69.6
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 8.2e-33 144.1 117 66.7
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 8.2e-33 144.1 90 77.8
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.8e-32 142.9 128 57.0
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 5.3e-32 141.4 85 81.2
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 6.9e-32 141.0 108 66.7
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 6.9e-32 141.0 115 64.3
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 9.0e-32 140.6 88 76.1
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 4.5e-31 138.3 121 63.6
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 7.6e-31 137.5 106 64.2
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.0e-30 137.1 100 72.0
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 6.5e-30 134.4 115 62.6
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.4e-29 133.3 115 62.6
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.6e-28 129.8 70 90.0
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 2.1e-28 129.4 106 63.2
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 7.9e-28 127.5 101 62.4
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 3.0e-27 125.6 69 88.4
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 5.1e-27 124.8 84 73.8
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 9.7e-26 120.6 172 44.2
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.6e-23 112.5 98 64.3
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 5.9e-23 111.3 70 72.9
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 1.2e-20 103.6 83 65.1
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.5e-15 86.7 60 70.0
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 5.9e-15 84.7 83 60.2
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.4e-13 80.1 66 54.5
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 3.2e-13 79.0 49 77.6
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 6.7e-11 71.2 48 68.8
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 4.4e-10 68.6 66 57.6
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-08 63.9 46 73.9
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 2.9e-06 55.8 60 51.7
Nn3g16162 Nelumbo nucifera HOM05D006060 ORTHO05D007268 5.0e-06 55.1 28 96.4


User provided reference genes

Program Settings