Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 1.7e-200 702.6 384 100.0
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 8.4e-192 673.7 383 95.6
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 6.0e-190 667.5 382 94.2
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 6.4e-184 647.5 379 93.1
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.4e-167 592.4 347 94.2
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.8e-165 586.3 382 83.5
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.0e-160 570.5 362 82.0
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 6.5e-160 567.8 361 82.8
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 8.4e-160 567.4 363 82.1
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 8.4e-160 567.4 379 83.4
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 6.0e-158 561.2 380 77.1
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 2.3e-157 559.3 362 80.7
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 5.1e-157 558.1 329 86.0
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 6.7e-157 557.8 337 84.0
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 6.7e-157 557.8 325 87.1
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 9.6e-156 553.9 329 85.1
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-155 552.4 332 84.0
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 4.8e-155 551.6 341 82.7
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 2.4e-154 549.3 340 82.6
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.1e-154 548.9 370 80.3
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-154 548.9 319 87.1
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 9.0e-154 547.4 351 79.8
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 3.4e-153 545.4 320 85.6
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 3.4e-153 545.4 323 84.8
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.7e-152 543.1 366 79.0
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.7e-152 543.1 349 78.5
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.2e-152 542.7 325 86.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.9e-152 542.3 322 84.8
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.8e-152 542.0 325 86.2
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 6.5e-152 541.2 360 77.5
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 8.4e-152 540.8 317 85.8
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.4e-151 540.0 327 83.8
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.4e-151 540.0 351 79.8
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 5.5e-151 538.1 349 79.1
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 9.3e-151 537.3 339 80.2
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 9.3e-151 537.3 340 80.3
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.1e-150 536.2 329 83.3
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.0e-149 533.9 342 79.5
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 6.7e-149 531.2 335 80.0
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 8.7e-149 530.8 325 84.3
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.5e-148 529.3 351 78.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 2.5e-148 529.3 320 82.5
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 4.3e-148 528.5 339 79.9
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 7.4e-148 527.7 352 78.1
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 3.7e-147 525.4 367 74.7
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 4.8e-147 525.0 344 79.1
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 8.2e-147 524.2 321 82.9
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.1e-146 523.9 355 76.1
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.1e-146 523.9 351 77.2
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.8e-146 523.1 309 84.5
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.9e-146 521.2 337 78.3
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.9e-146 521.2 337 78.3
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.5e-145 520.0 335 78.8
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 2.0e-145 519.6 320 80.9
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 2.6e-145 519.2 341 78.9
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 4.5e-145 518.5 321 81.0
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 4.5e-145 518.5 336 79.2
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 4.5e-145 518.5 351 76.9
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 5.9e-145 518.1 318 82.4
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 7.7e-145 517.7 318 82.4
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.0e-144 517.3 291 88.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.7e-144 516.5 336 79.2
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.7e-144 516.5 371 73.9
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 2.2e-144 516.2 336 79.2
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 2.9e-144 515.8 318 82.1
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 3.8e-144 515.4 321 81.3
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 5.0e-144 515.0 336 78.9
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 5.0e-144 515.0 336 78.9
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 5.0e-144 515.0 336 78.9
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 8.5e-144 514.2 352 74.4
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.1e-143 513.8 319 81.2
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.4e-143 513.5 336 78.6
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 2.5e-143 512.7 364 74.7
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 2.5e-143 512.7 364 74.7
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 2.5e-143 512.7 364 74.7
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 3.2e-143 512.3 351 74.6
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.2e-143 511.9 349 73.6
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.2e-143 511.9 349 73.6
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 5.5e-143 511.5 336 78.3
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 7.2e-143 511.1 304 82.6
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.6e-142 510.0 351 74.4
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.0e-141 507.3 320 79.1
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.0e-141 507.3 320 79.7
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 6.7e-141 504.6 359 71.6
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 8.8e-141 504.2 319 78.4
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 3.3e-140 502.3 299 81.3
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 7.4e-140 501.1 304 81.9
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.7e-139 500.0 345 75.1
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 4.8e-139 498.4 315 79.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.1e-138 497.3 314 78.0
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 2.4e-138 496.1 328 76.5
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.1e-138 495.7 339 76.7
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 6.9e-138 494.6 329 74.2
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.0e-137 493.0 345 74.2
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.0e-136 490.7 330 78.2
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 5.0e-136 488.4 320 79.4
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 8.5e-136 487.6 321 77.6
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-135 486.9 319 79.0
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 9.4e-135 484.2 309 78.3
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-133 480.7 306 81.0
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 8.8e-133 477.6 385 69.6
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 7.4e-132 474.6 296 78.0
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.4e-130 469.5 318 74.5
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.5e-129 465.3 319 72.4
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.7e-128 463.4 306 76.5
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.0e-128 461.8 345 69.0
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 2.5e-127 459.5 297 79.8
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.2e-127 459.1 316 71.2
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 4.2e-127 458.8 312 73.7
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.4e-125 453.8 284 82.4
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 2.6e-124 449.5 332 72.9
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.6e-124 449.5 271 84.1
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 2.8e-123 446.0 315 68.3
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.1e-122 444.1 318 68.9
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.8e-122 443.4 318 69.2
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 2.4e-122 443.0 361 66.2
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 2.0e-121 439.9 370 67.6
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 7.7e-121 438.0 368 64.7
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 1.0e-120 437.6 309 71.2
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.7e-120 436.8 289 78.2
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.3e-112 410.6 353 62.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.3e-112 410.6 353 62.6
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 4.7e-110 402.1 349 63.9
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.8e-109 400.2 319 66.5
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.5e-108 397.1 269 76.6
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 3.7e-107 392.5 299 68.6
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 2.4e-106 389.8 234 83.3
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 5.9e-105 385.2 240 80.0
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.0e-104 384.4 310 64.5
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 5.6e-103 378.6 300 67.3
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.6e-94 350.5 225 78.2
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.0e-89 332.0 200 80.5
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.2e-86 324.3 198 77.8
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.1e-85 321.2 319 57.1
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.5e-84 315.1 228 73.7
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.2e-74 283.1 197 74.1
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.0e-73 278.9 262 61.5
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 3.1e-69 266.5 177 77.4
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.3e-63 246.5 147 79.6
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.4e-61 240.4 167 76.0
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.2e-41 174.9 118 73.7
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.1e-41 174.1 119 73.1
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.1e-39 168.3 123 69.9
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.1e-37 161.8 125 63.2
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.6e-33 147.9 82 82.9
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-33 147.9 117 71.8
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.6e-33 146.7 120 69.2
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.1e-31 141.7 124 67.7
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 9.7e-31 138.7 114 64.0
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.3e-30 138.3 94 72.3
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.2e-27 127.5 267 30.0
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.0e-24 118.6 88 70.5
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.8e-24 115.5 86 66.3
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 2.8e-22 110.5 79 79.7
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 7.7e-20 102.4 72 69.4
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.9e-19 100.5 59 69.5
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.4e-18 95.5 58 69.0
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-16 91.3 73 69.9
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 2.8e-14 84.0 52 71.2


User provided reference genes

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