Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 0.0e+00 2493.8 1292 100.0
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 0.0e+00 1909.8 1294 79.3
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 0.0e+00 1909.0 1328 77.9
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 0.0e+00 1892.5 1294 79.1
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 0.0e+00 1879.4 1328 77.3
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 0.0e+00 1509.6 1320 63.0
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 0.0e+00 1409.4 1422 56.7
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 3.6e-303 1045.4 1336 47.8
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 7.9e-303 1044.3 1345 47.6
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 3.1e-291 1005.7 1344 46.8
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 8.0e-263 911.4 1334 44.0
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 3.7e-260 902.5 1340 43.3
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 2.0e-258 896.7 1325 43.7
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 6.6e-257 891.7 1353 43.2
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 3.2e-251 872.8 1337 43.1
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 2.1e-247 860.1 1315 43.8
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.1e-243 847.8 1331 42.2
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 2.4e-243 846.7 1314 41.9
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 3.8e-228 796.2 1384 40.2
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 6.9e-222 775.4 1283 41.4
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 1.1e-216 758.1 1434 37.7
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 6.9e-206 722.2 1375 36.9
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.1e-200 704.9 1272 38.3
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 7.4e-200 702.2 1488 36.0
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 2.2e-196 690.6 1291 39.3
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 2.9e-196 690.3 1327 37.7
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 1.4e-190 671.4 1337 36.7
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 3.9e-185 653.3 1312 36.7
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 1.5e-184 651.4 1353 35.9
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 4.3e-184 649.8 1288 36.5
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 3.7e-183 646.7 1378 35.1
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 1.4e-182 644.8 1384 35.5
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 5.0e-180 636.3 1349 35.2
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 2.5e-179 634.0 1280 36.4
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 2.6e-176 624.0 1355 34.3
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 7.4e-176 622.5 1613 33.7
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 6.3e-175 619.4 1404 34.0
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 4.1e-174 616.7 1320 35.5
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 5.3e-174 616.3 1297 36.2
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 1.2e-173 615.1 1330 34.6
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 7.7e-173 612.5 1361 34.4
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 2.5e-171 607.4 1330 34.7
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 8.0e-170 602.4 1320 34.0
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 2.0e-168 597.8 1237 35.8
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 3.3e-168 597.0 1320 34.5
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 1.3e-167 595.1 1323 32.9
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 8.2e-167 592.4 1328 33.9
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 1.4e-166 591.7 1318 33.3
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 1.6e-165 588.2 1318 34.6
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 4.5e-165 586.6 1433 32.8
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.7e-164 584.7 1362 33.0
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 2.2e-164 584.3 1366 34.2
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 1.9e-163 581.3 1366 34.2
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 1.9e-163 581.3 1366 34.2
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 5.5e-163 579.7 1344 34.6
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.6e-162 577.0 935 42.1
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 6.1e-162 576.2 1393 33.5
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.0e-161 575.5 1520 33.6
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 1.0e-161 575.5 1447 33.4
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 8.8e-161 572.4 1375 32.8
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 2.0e-160 571.2 1396 34.2
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 2.6e-160 570.9 1339 33.5
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 7.5e-160 569.3 1443 33.1
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 8.3e-159 565.8 1330 33.4
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 4.1e-158 563.5 1317 32.6
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 2.9e-156 557.4 1361 32.9
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 7.2e-155 552.7 1384 33.4
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 4.0e-153 547.0 1321 33.2
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.4e-150 538.5 995 39.0
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 3.1e-150 537.3 1337 32.0
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 5.0e-148 530.0 1295 31.8
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 1.9e-147 528.1 1269 33.4
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 2.8e-146 524.2 1555 30.0
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 1.0e-145 522.3 1295 31.7
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 5.2e-145 520.0 1336 31.9
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 3.1e-137 494.2 1546 30.1
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 8.9e-137 492.7 1340 30.8
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 8.9e-137 492.7 1535 29.8
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 1.7e-135 488.4 1327 32.2
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 2.4e-134 484.6 1123 33.3
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 1.9e-131 474.9 1097 34.5
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 8.0e-130 469.5 883 38.6
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 2.2e-127 461.5 1336 31.1
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 8.3e-119 433.0 1453 28.7
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.7e-117 427.9 1274 29.2
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 2.5e-115 421.4 638 41.4
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 3.8e-111 407.5 1408 28.5
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 6.6e-108 396.7 1475 30.0
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 2.5e-107 394.8 1284 28.4
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.3e-107 394.0 982 33.2
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 7.3e-107 393.3 982 33.2
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 1.3e-106 392.5 1318 28.5
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 9.0e-105 386.3 1285 28.1
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 1.5e-104 385.6 1323 29.2
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 3.2e-102 377.9 1306 28.3
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 3.6e-98 364.4 716 38.7
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 5.3e-97 360.5 1345 27.2
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 3.7e-90 337.8 266 62.4
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.8e-89 335.5 258 62.0
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 5.5e-86 323.9 531 40.5
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 1.0e-84 319.7 407 44.2
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 5.3e-81 307.4 465 41.5
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.5e-80 305.8 370 49.2
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 6.9e-73 280.4 1314 25.3
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 4.2e-70 271.2 283 55.1
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 7.2e-70 270.4 476 38.0
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.2e-61 243.0 207 61.8
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.2e-61 243.0 199 63.8
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 1.5e-59 236.1 501 31.1
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.0e-47 196.8 119 75.6
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 7.2e-46 190.7 115 78.3
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 6.3e-42 177.6 225 43.1
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 1.6e-40 172.9 111 70.3
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 1.5e-38 166.4 146 56.2
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.7e-35 154.5 152 54.6
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.5e-32 144.8 90 73.3
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.8e-29 135.6 82 70.7
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 6.1e-29 134.4 384 29.4
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 9.8e-27 127.1 76 73.7
AagrBONN_evm.TU.Sc2ySwM_362.1676 Anthoceros agrestis HOM05D004942 ORTHO05D005687 2.9e-26 125.6 396 27.5
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.2e-24 120.2 177 45.2
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 1.0e-23 117.1 225 35.1
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.1e-21 109.4 68 75.0
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.6e-19 102.4 67 71.6
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.4e-19 102.1 82 62.2
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 7.5e-19 100.9 67 70.1
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 1.3e-18 100.1 99 53.5
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 8.3e-18 97.4 159 46.5
FvH4_7g33791 Fragaria vesca HOM05D004942 ORTHO05D005687 4.1e-17 95.1 216 38.9
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 3.6e-13 82.0 121 33.1
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 4.7e-13 81.6 125 38.4
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 3.1e-12 79.0 123 35.8
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 2.4e-09 69.3 68 50.0
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.6e-08 66.6 311 27.7
CBR_g26527 Chara braunii HOM05D001007 ORTHO05D008005 3.9e-07 62.0 92 32.6
SHI10795 Sapria himalayana HOM05D004942 ORTHO05D005687 2.5e-06 59.3 40 65.0


User provided reference genes

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