Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 0.0e+00 1624.4 959 100.0
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 0.0e+00 1456.0 960 91.2
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 0.0e+00 1453.3 960 90.0
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 0.0e+00 1438.7 960 88.0
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 0.0e+00 1395.6 960 88.6
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 0.0e+00 1345.9 962 84.6
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 0.0e+00 1093.2 972 69.0
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 1.6e-308 1062.8 970 66.0
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 5.5e-293 1011.1 949 62.6
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 1.9e-277 959.5 948 59.8
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 1.4e-275 953.4 955 60.0
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 6.3e-273 944.5 965 60.8
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.4e-272 942.6 950 60.4
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.2e-271 940.3 950 59.6
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 1.2e-271 940.3 918 60.9
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 2.9e-270 935.6 949 59.3
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 3.3e-269 932.2 962 59.9
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 6.1e-268 927.9 985 58.3
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 2.2e-265 919.5 917 59.7
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 3.7e-265 918.7 916 58.5
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 3.3e-261 905.6 913 59.7
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.2e-260 903.7 976 57.3
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.0e-260 901.0 973 57.8
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 2.2e-257 892.9 970 57.3
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 6.0e-255 884.8 911 58.9
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 6.6e-254 881.3 948 56.9
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 8.1e-252 874.4 889 59.5
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 9.8e-250 867.5 917 58.9
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 8.3e-249 864.4 980 54.6
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.4e-248 863.6 989 55.7
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 3.2e-248 862.4 950 55.8
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 1.7e-246 856.7 931 56.0
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 2.5e-245 852.8 916 56.3
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 2.5e-245 852.8 955 56.3
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 3.1e-243 845.9 942 56.1
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 4.0e-243 845.5 942 57.3
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 5.2e-243 845.1 918 57.0
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 7.6e-242 841.3 909 57.5
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 3.2e-240 835.9 960 54.0
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 3.9e-238 828.9 1103 50.7
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 3.9e-238 828.9 908 55.4
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 2.5e-237 826.2 904 54.2
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 1.8e-235 820.1 942 55.0
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 8.9e-235 817.8 916 54.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 2.2e-233 813.1 909 55.7
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 8.4e-233 811.2 925 53.8
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 1.1e-232 810.8 918 56.0
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 1.9e-232 810.1 897 53.8
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 3.2e-232 809.3 934 54.1
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.2e-232 809.3 925 55.1
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 5.4e-232 808.5 890 55.1
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 7.1e-232 808.1 917 54.0
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 2.1e-231 806.6 929 53.0
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 7.8e-231 804.7 922 55.4
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.3e-230 803.9 922 55.2
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 2.3e-230 803.1 912 55.4
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.1e-229 800.8 849 60.8
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 7.3e-229 798.1 908 54.8
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 9.6e-229 797.7 921 55.4
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 4.8e-228 795.4 936 53.7
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 4.8e-228 795.4 1004 50.5
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.1e-227 794.3 892 54.1
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 2.4e-227 793.1 926 56.2
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 5.3e-227 792.0 893 54.0
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.5e-226 790.4 934 54.1
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 3.4e-226 789.3 966 52.4
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 4.4e-226 788.9 949 52.7
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 7.6e-226 788.1 928 52.5
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 2.9e-225 786.2 975 51.2
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.4e-224 783.9 840 55.8
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.1e-223 780.0 968 52.2
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 2.7e-223 779.6 892 53.9
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.7e-222 776.9 955 52.1
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 5.1e-222 775.4 924 53.2
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 1.1e-221 774.2 927 52.1
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 1.5e-221 773.9 893 54.1
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 1.9e-221 773.5 956 53.2
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.5e-221 773.1 949 51.0
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 1.4e-219 767.3 909 54.1
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 8.4e-217 758.1 895 53.3
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 4.2e-216 755.7 896 53.1
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 9.3e-216 754.6 948 50.7
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 2.7e-215 753.1 936 49.9
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 1.8e-214 750.4 952 49.8
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 2.3e-214 750.0 956 51.4
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 3.9e-214 749.2 956 51.7
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 3.2e-208 729.6 1029 48.5
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 2.7e-207 726.5 917 50.3
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 5.3e-203 712.2 921 49.3
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 8.4e-201 704.9 899 48.9
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 3.0e-198 696.4 983 46.3
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.2e-196 690.3 905 48.5
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 2.3e-190 670.2 881 48.9
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 3.8e-177 626.3 891 45.8
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 1.4e-163 581.3 442 64.7
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 5.2e-158 562.8 946 41.8
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 1.4e-155 554.7 698 52.4
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 6.8e-150 535.8 393 69.5
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 6.4e-148 529.3 931 41.0
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 1.4e-147 528.1 950 40.0
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 5.0e-137 493.0 572 54.5
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 9.9e-125 452.2 625 47.5
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 1.8e-118 431.4 515 57.3
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.7e-113 412.5 664 50.3
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 2.1e-111 407.9 830 38.1
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.6e-90 337.0 493 48.9
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 7.9e-90 336.3 618 42.6
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.3e-89 334.7 266 65.8
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 2.7e-66 258.1 261 53.3
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.6e-66 257.7 326 56.1
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.9e-60 238.0 266 48.5
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 6.5e-60 236.9 192 61.5
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.5e-53 214.5 407 44.7
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 4.7e-50 204.1 947 27.2
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.3e-47 196.1 223 55.2
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 3.1e-46 191.4 291 46.7
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 2.7e-45 188.3 320 44.1
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.5e-44 183.7 306 45.4
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 4.1e-38 164.5 377 36.3
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 8.0e-34 150.2 1164 24.7
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.7e-29 135.2 329 40.7
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 4.6e-29 134.4 718 26.7
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 1.0e-28 133.3 99 69.7
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 6.2e-26 124.0 114 62.3
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 4.0e-25 121.3 110 62.7
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 1.3e-23 116.3 347 36.6
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 6.4e-23 114.0 89 62.9
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 3.2e-22 111.7 89 62.9
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 2.7e-21 108.6 672 24.6
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 1.7e-20 105.9 70 78.6
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.3e-20 105.5 63 85.7
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.9e-20 104.8 115 53.9
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 5.6e-19 100.9 58 91.4
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.2e-18 99.8 63 82.5
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.2e-18 99.8 63 82.5
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.8e-17 95.9 115 46.1
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.3e-17 95.5 115 45.2
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.1e-14 84.7 82 63.4
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 3.5e-13 81.6 205 30.7
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 6.6e-12 77.4 206 34.0
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-09 70.1 41 87.8
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.6e-08 63.9 41 85.4
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.1e-06 60.1 141 36.9
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.4e-06 59.7 47 68.1
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.9e-06 59.3 69 50.7
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 7.1e-06 57.4 90 43.3


User provided reference genes

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