Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 6.2e-74 280.8 151 100.0
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 4.8e-18 95.1 47 91.5
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 8.2e-18 94.4 47 89.4
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.1e-17 94.0 47 89.4
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-17 94.0 47 89.4
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.1e-17 94.0 47 89.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-17 94.0 47 89.4
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-17 94.0 47 89.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 3.1e-17 92.4 48 85.4
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.1e-17 92.0 47 87.2
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.1e-17 92.0 47 85.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.1e-17 92.0 47 85.1
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.1e-17 92.0 47 85.1
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 7.0e-17 91.3 48 83.3
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 9.1e-17 90.9 48 81.2
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.6e-16 89.4 48 79.2
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.6e-16 89.4 48 79.2
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.6e-16 89.4 45 84.4
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.5e-16 89.0 48 79.2
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 3.5e-16 89.0 48 77.1
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.5e-16 89.0 53 71.7
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.5e-16 89.0 48 79.2
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 4.5e-16 88.6 64 67.2
FAN06G0752 Fragaria x ananassa HOM05D001429 ORTHO05D001420 4.5e-16 88.6 79 68.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 4.5e-16 88.6 48 79.2
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 4.5e-16 88.6 48 79.2
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 4.5e-16 88.6 48 79.2
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 5.9e-16 88.2 47 80.9
FvH4_7g10280 Fragaria vesca HOM05D001429 ORTHO05D001420 5.9e-16 88.2 79 70.9
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 5.9e-16 88.2 48 77.1
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 5.9e-16 88.2 47 80.9
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 5.9e-16 88.2 48 81.2
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 7.7e-16 87.8 48 79.2
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 7.7e-16 87.8 48 79.2
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 7.7e-16 87.8 48 79.2
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 7.7e-16 87.8 47 80.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 7.7e-16 87.8 47 80.9
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.0e-15 87.4 48 77.1
FAN06G2226 Fragaria x ananassa HOM05D001429 ORTHO05D001420 1.0e-15 87.4 50 84.0
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.0e-15 87.4 47 80.9
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-15 87.4 48 77.1
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.0e-15 87.4 98 48.0
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.0e-15 87.4 53 71.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.0e-15 87.4 48 81.2
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.0e-15 87.4 48 77.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.3e-15 87.0 47 80.9
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.3e-15 87.0 47 78.7
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.3e-15 87.0 53 71.7
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.3e-15 87.0 101 51.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.7e-15 86.7 48 79.2
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.7e-15 86.7 47 80.9
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.2e-15 86.3 48 77.1
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.2e-15 86.3 48 77.1
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.2e-15 86.3 48 77.1
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.2e-15 86.3 48 77.1
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.2e-15 86.3 48 77.1
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.2e-15 86.3 48 77.1
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.2e-15 86.3 49 79.6
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.2e-15 86.3 48 77.1
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.2e-15 86.3 48 77.1
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.2e-15 86.3 48 77.1
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.9e-15 85.9 47 76.6
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.9e-15 85.9 48 77.1
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.9e-15 85.9 47 80.9
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.9e-15 85.9 47 78.7
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.9e-15 85.9 48 75.0
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.9e-15 85.9 47 80.9
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.9e-15 85.9 47 78.7
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.8e-15 85.5 48 75.0
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 3.8e-15 85.5 47 80.9
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 3.8e-15 85.5 47 80.9
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 3.8e-15 85.5 48 77.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.8e-15 85.5 48 75.0
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.8e-15 85.5 48 75.0
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 3.8e-15 85.5 48 77.1
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 3.8e-15 85.5 48 77.1
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 3.8e-15 85.5 48 77.1
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 5.0e-15 85.1 47 76.6
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 5.0e-15 85.1 48 77.1
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.0e-15 85.1 48 77.1
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 5.0e-15 85.1 48 75.0
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 6.5e-15 84.7 48 79.2
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 6.5e-15 84.7 48 75.0
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 6.5e-15 84.7 44 81.8
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 8.5e-15 84.3 48 72.9
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 8.5e-15 84.3 48 72.9
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 8.5e-15 84.3 48 72.9
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 8.5e-15 84.3 48 72.9
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 8.5e-15 84.3 47 78.7
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.1e-14 84.0 47 76.6
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.1e-14 84.0 48 70.8
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.1e-14 84.0 48 75.0
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.1e-14 84.0 48 72.9
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.5e-14 83.6 48 70.8
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.5e-14 83.6 48 72.9
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.5e-14 83.6 104 47.1
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.5e-14 83.6 48 70.8
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.5e-14 82.8 48 72.9
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.5e-14 82.8 48 72.9
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.5e-14 82.8 47 72.3
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 2.5e-14 82.8 48 72.9
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.2e-14 82.4 47 76.6
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 3.2e-14 82.4 47 72.3
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 5.5e-14 81.6 48 72.9
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 5.5e-14 81.6 47 74.5
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 5.5e-14 81.6 48 72.9
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 5.5e-14 81.6 47 74.5
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 5.5e-14 81.6 47 76.6
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 5.5e-14 81.6 48 70.8
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 5.5e-14 81.6 48 68.8
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 5.5e-14 81.6 47 78.7
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 9.4e-14 80.9 47 74.5
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 9.4e-14 80.9 47 72.3
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 6.1e-13 78.2 48 66.7
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-12 77.4 94 45.7
FAN01G0869 Fragaria x ananassa HOM05D001429 ORTHO05D001420 1.8e-12 76.6 79 62.0
FAN03G2297 Fragaria x ananassa HOM05D001429 ORTHO05D001420 1.8e-12 76.6 79 62.0
FAN10G2227 Fragaria x ananassa HOM05D001429 ORTHO05D001420 1.8e-12 76.6 79 62.0
FAN10G3725 Fragaria x ananassa HOM05D001429 ORTHO05D001420 1.8e-12 76.6 79 62.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.0e-12 75.5 48 64.6
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 8.8e-12 74.3 47 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 4.4e-11 72.0 53 54.7
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.3e-10 70.5 47 57.4
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 8.2e-10 67.8 53 49.1
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.4e-09 66.2 47 66.0
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.1e-09 65.9 44 70.5
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 7.0e-09 64.7 47 55.3
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.2e-08 63.9 85 40.0
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 3.5e-08 62.4 34 73.5
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 7.7e-08 61.2 47 51.1
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 5.0e-07 58.5 47 48.9
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.1e-06 57.4 32 71.9
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.1e-06 57.4 111 32.4
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.1e-06 57.4 88 37.5
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.5e-06 57.0 46 47.8
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 4.2e-06 55.5 36 66.7
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 9.4e-06 54.3 35 68.6
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 9.4e-06 54.3 59 45.8


User provided reference genes

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