Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0435691 Rosa chinensis HOM05D004993 ORTHO05D008532 2.9e-199 698.4 351 100.0
FAN07G2608 Fragaria x ananassa HOM05D004993 ORTHO05D008532 8.2e-178 627.1 351 89.5
FvH4_4g27971 Fragaria vesca HOM05D004993 ORTHO05D008532 1.4e-177 626.3 351 89.7
FAN17G0685 Fragaria x ananassa HOM05D004993 ORTHO05D008532 1.9e-158 562.8 305 91.8
Prupe.1G306400 Prunus persica HOM05D004993 ORTHO05D008532 2.2e-151 539.3 349 79.4
MD16G1046900 Malus domestica HOM05D004993 ORTHO05D008532 1.7e-146 523.1 339 79.1
CiPaw.16G003600 Carya illinoinensis HOM05D004993 ORTHO05D008532 8.0e-141 504.2 349 74.2
Cfa018620 Carpinus fangiana HOM05D004993 ORTHO05D008532 2.6e-139 499.2 353 73.7
TWI31G0395 Tripterygium wilfordii HOM05D004993 ORTHO05D008532 2.4e-137 492.7 329 76.0
GSVIVG01011941001 Vitis vinifera HOM05D004993 ORTHO05D008532 5.4e-137 491.5 340 73.8
TAR371G0197 Trochodendron aralioides HOM05D004993 ORTHO05D008532 2.0e-136 489.6 346 74.0
CANSAT64G2606 Cannabis sativa HOM05D004993 ORTHO05D008532 8.6e-135 484.2 337 72.4
Gohir.D12G173500 Gossypium hirsutum HOM05D004993 ORTHO05D008532 1.5e-134 483.4 329 75.4
Gorai.008G186000 Gossypium raimondii HOM05D004993 ORTHO05D008532 5.6e-134 481.5 329 75.1
Hma1.2p1_0862F.1_g229950 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 7.3e-134 481.1 345 72.8
Gorai.008G185400 Gossypium raimondii HOM05D004993 ORTHO05D008532 4.7e-133 478.4 345 71.6
Gohir.A12G170200 Gossypium hirsutum HOM05D004993 ORTHO05D008532 8.0e-133 477.6 329 74.5
CSS0044433 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 2.3e-132 476.1 345 71.9
Gohir.D12G172900 Gossypium hirsutum HOM05D004993 ORTHO05D008532 2.3e-132 476.1 345 71.0
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 4.0e-132 475.3 401 64.8
Thecc.02G359900 Theobroma cacao HOM05D004993 ORTHO05D008532 5.2e-132 474.9 283 80.9
Gohir.A12G169600 Gossypium hirsutum HOM05D004993 ORTHO05D008532 9.8e-131 470.7 345 70.1
Ciclev10031998m.g Citrus clementina HOM05D004993 ORTHO05D008532 3.7e-130 468.8 318 74.2
Manes.14G098500 Manihot esculenta HOM05D004993 ORTHO05D008532 1.4e-129 466.8 345 70.1
Nn3g17764 Nelumbo nucifera HOM05D004993 ORTHO05D008532 3.2e-129 465.7 348 70.1
EL10Ac6g14467 Beta vulgaris HOM05D004993 ORTHO05D008532 5.4e-129 464.9 346 67.9
Lj2g0001269 Lotus japonicus HOM05D004993 ORTHO05D008532 1.2e-128 463.8 289 77.2
MELO3C012219.2 Cucumis melo HOM05D004993 ORTHO05D008532 1.6e-128 463.4 347 67.1
Aqoxy3G03926 Aquilegia oxysepala HOM05D004993 ORTHO05D008532 3.5e-128 462.2 335 70.1
AUR62002913 Chenopodium quinoa HOM05D004993 ORTHO05D008532 1.0e-127 460.7 348 67.5
Lj3A1018T65 Lonicera japonica HOM05D004993 ORTHO05D008532 1.3e-127 460.3 283 79.2
Sc04g0006640 Simmondsia chinensis HOM05D004993 ORTHO05D008532 1.3e-127 460.3 326 71.2
CsaV3_5G034030 Cucumis sativus L. HOM05D004993 ORTHO05D008532 2.3e-127 459.5 347 66.9
Phvul.003G028100 Phaseolus vulgaris HOM05D004993 ORTHO05D008532 2.3e-127 459.5 348 69.0
COL.COLO4_07879 Corchorus olitorius HOM05D004993 ORTHO05D008532 3.9e-127 458.8 345 70.4
Duzib251G0893 Durio zibethinus HOM05D004993 ORTHO05D008532 3.9e-127 458.8 360 67.5
Cc11_g10510 Coffea canephora HOM05D004993 ORTHO05D008532 6.6e-127 458.0 335 71.6
Lalb_Chr17g0341941 Lupinus albus HOM05D004993 ORTHO05D008532 1.9e-126 456.4 285 76.5
VMungo1215G2957 Vigna mungo HOM05D004993 ORTHO05D008532 1.9e-126 456.4 350 66.9
Potri.008G117600 Populus trichocarpa HOM05D004993 ORTHO05D008532 3.3e-126 455.7 322 72.0
AUR62035273 Chenopodium quinoa HOM05D004993 ORTHO05D008532 5.6e-126 454.9 294 74.8
PGR102G1294 Punica granatum HOM05D004993 ORTHO05D008532 1.2e-125 453.8 343 70.3
MBI16_g25106_MAGBIO Magnolia biondii HOM05D004993 ORTHO05D008532 1.6e-125 453.4 279 77.1
Glyma.02G098700 Glycine max HOM05D004993 ORTHO05D008532 3.6e-125 452.2 306 72.9
MSTRG.7682 Avicennia marina HOM05D004993 ORTHO05D008532 8.0e-125 451.1 333 68.8
AT1G29700 Arabidopsis thaliana HOM05D004993 ORTHO05D008532 1.4e-124 450.3 330 69.7
Dinv16501 Davidia involucrata HOM05D004993 ORTHO05D008532 1.4e-124 450.3 324 72.2
TPR.G38312 Trifolium pratense HOM05D004993 ORTHO05D008532 1.8e-124 449.9 343 66.8
PSO063G3032 Papaver somniferum HOM05D004993 ORTHO05D008532 4.0e-124 448.7 329 70.5
AL1G43530 Arabidopsis lyrata HOM05D004993 ORTHO05D008532 5.2e-124 448.4 330 69.4
Aa31LG6G5980 Aethionema arabicum HOM05D004993 ORTHO05D008532 6.8e-124 448.0 328 68.3
BraA08t34448Z Brassica rapa HOM05D004993 ORTHO05D008532 2.0e-123 446.4 339 67.0
Nitab4.5_0000582g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 2.0e-123 446.4 292 75.3
Migut.O00833 Erythranthe guttata HOM05D004993 ORTHO05D008532 2.6e-123 446.0 278 75.9
HanXRQChr17g0567931 Helianthus annuus HOM05D004993 ORTHO05D008532 2.6e-123 446.0 331 67.7
Lsat_1_v5_gn_4_20101 Lactuca sativa HOM05D004993 ORTHO05D008532 5.8e-123 444.9 327 69.7
arahy.Tifrunner.gnm1.ann1.VJ59XU Arachis hypogaea HOM05D004993 ORTHO05D008532 7.5e-123 444.5 347 66.0
Carub.0001s2791 Capsella rubella HOM05D004993 ORTHO05D008532 7.5e-123 444.5 281 76.2
vmacro01368 Vaccinium macrocarpon HOM05D004993 ORTHO05D008532 9.8e-123 444.1 384 62.5
A08p24930 Brassica napus HOM05D004993 ORTHO05D008532 1.3e-122 443.7 339 66.4
Sed0024124 Sechium edule HOM05D004993 ORTHO05D008532 2.2e-122 443.0 349 66.5
C03p76040 Brassica napus HOM05D004993 ORTHO05D008532 2.9e-122 442.6 351 64.4
THA.LOC104808209 Tarenaya hassleriana HOM05D004993 ORTHO05D008532 3.7e-122 442.2 298 71.8
BolC3t19860H Brassica oleracea HOM05D004993 ORTHO05D008532 4.9e-122 441.8 351 64.4
CARHR029050 Cardamine hirsuta HOM05D004993 ORTHO05D008532 6.4e-122 441.4 281 75.8
arahy.Tifrunner.gnm1.ann1.5ZE4QE Arachis hypogaea HOM05D004993 ORTHO05D008532 1.9e-121 439.9 348 65.8
BcaC01g00125 Brassica carinata HOM05D004993 ORTHO05D008532 1.9e-121 439.9 348 64.9
RhsimUnG0136600 Rhododendron simsii HOM05D004993 ORTHO05D008532 1.9e-121 439.9 348 66.4
CSS0008970 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 3.2e-121 439.1 345 67.8
QL01p044817 Quercus lobata HOM05D004993 ORTHO05D008532 3.2e-121 439.1 318 71.1
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 3.2e-121 439.1 285 74.4
Sp1g25580 Schrenkiella parvula HOM05D004993 ORTHO05D008532 9.2e-121 437.6 332 67.5
BcaB03g12171 Brassica carinata HOM05D004993 ORTHO05D008532 1.6e-120 436.8 331 66.8
Solyc03g111700.3 Solanum lycopersicum HOM05D004993 ORTHO05D008532 2.7e-120 436.0 274 75.9
Sabra08G0089200 Salix brachista HOM05D004993 ORTHO05D008532 3.5e-120 435.6 413 58.6
ECA234G2629 Erigeron canadensis HOM05D004993 ORTHO05D008532 4.6e-120 435.3 294 72.1
Sopen03g030820 Solanum pennellii HOM05D004993 ORTHO05D008532 6.0e-120 434.9 318 69.2
unitig_8.g3446 Utricularia gibba HOM05D004993 ORTHO05D008532 2.3e-119 433.0 333 66.1
Atru.chr11.1340 Acer truncatum HOM05D004993 ORTHO05D008532 3.0e-119 432.6 311 71.4
CAN.G630.88 Capsicum annuum HOM05D004993 ORTHO05D008532 8.6e-119 431.0 281 76.2
PGSC0003DMG402001731 Solanum tuberosum HOM05D004993 ORTHO05D008532 4.7e-117 425.2 307 69.4
SGA_v2.0_scaffold209G42027 Striga asiatica HOM05D004993 ORTHO05D008532 6.4e-114 414.8 365 61.9
Peaxi162Scf00004g01611 Petunia axillaris HOM05D004993 ORTHO05D008532 3.5e-112 409.1 279 72.8
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 3.3e-110 402.5 415 53.0
Medtr5g054360 Medicago truncatula HOM05D004993 ORTHO05D008532 9.6e-110 401.0 267 72.3
Eucgr.B03043 Eucalyptus grandis HOM05D004993 ORTHO05D008532 1.6e-109 400.2 265 74.3
ATR0681G095 Amborella trichopoda HOM05D004993 ORTHO05D008532 4.7e-109 398.7 326 62.0
CDE04G2310 Ceratophyllum demersum HOM05D004993 ORTHO05D008532 8.9e-108 394.4 343 59.2
PSO782G1223 Papaver somniferum HOM05D004993 ORTHO05D008532 1.9e-105 386.7 331 64.4
HPP92_005309 Vanilla planifolia HOM05D004993 ORTHO05D008532 4.2e-105 385.6 258 69.4
Nitab4.5_0004719g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 5.1e-103 378.6 229 79.0
Thhalv10009499m.g Eutrema salsugineum HOM05D004993 ORTHO05D008532 3.6e-101 372.5 308 62.3
MD13G1045600 Malus domestica HOM05D004993 ORTHO05D008532 2.0e-99 366.7 323 62.5
CiPaw.15G004200 Carya illinoinensis HOM05D004993 ORTHO05D008532 2.7e-96 356.3 329 59.3
Mapoly0053s0088 Marchantia polymorpha HOM05D004993 ORTHO05D008532 2.3e-95 353.2 352 50.0
Ah.02g127080 Amaranthus hybridus HOM05D004993 ORTHO05D008532 1.6e-93 347.1 315 60.3
SMO361G0287 Selaginella moellendorffii HOM05D004993 ORTHO05D008532 2.4e-89 333.2 256 60.2
Os12g0641300 Oryza sativa ssp. japonica HOM05D004993 ORTHO05D008532 2.3e-87 326.6 272 60.7
Pp3c15_25860 Physcomitrium patens HOM05D004993 ORTHO05D008532 1.1e-86 324.3 339 48.1
AagrBONN_evm.TU.Sc2ySwM_344.778 Anthoceros agrestis HOM05D004993 ORTHO05D008532 1.3e-82 310.8 258 57.4
Zm00001eb133920 Zea mays HOM05D004993 ORTHO05D008532 8.7e-79 298.1 279 55.9
Migut.L01091 Erythranthe guttata HOM05D004993 ORTHO05D008532 5.5e-73 278.9 156 78.8
Psat2g091800 Pisum sativum HOM05D004993 ORTHO05D008532 1.5e-67 260.8 231 58.9
Actinidia38387 Actinidia chinensis HOM05D004993 ORTHO05D008532 1.6e-64 250.8 147 82.3
Hma1.2p1_0862F.1_g229960 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 1.3e-58 231.1 134 83.6
CBR_g46806 Chara braunii HOM05D004993 ORTHO05D008532 2.5e-57 226.9 268 44.8
Cpa.g.c35723 Carica papaya HOM05D004993 ORTHO05D008532 1.1e-54 218.0 134 76.9
Ca_20419_v3 Cicer arietinum L. HOM05D004993 ORTHO05D008532 9.7e-54 214.9 135 76.3
ECA248G2500 Erigeron canadensis HOM05D004993 ORTHO05D008532 1.5e-51 207.6 282 44.3
SEGI_28994 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 1.5e-46 191.0 134 65.7
Actinidia13671 Actinidia chinensis HOM05D004993 ORTHO05D008532 5.0e-42 176.0 97 85.6
MCO14G082 Micromonas commoda HOM05D004993 ORTHO05D008532 2.2e-34 150.6 323 34.7
Pp3c27_8380 Physcomitrium patens HOM05D004993 ORTHO05D008532 8.0e-32 142.1 307 33.9
Cre10.g442950 Chlamydomonas reinhardtii HOM05D004993 ORTHO05D008532 1.0e-31 141.7 269 31.2
SEGI_13194 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 1.4e-15 88.2 105 45.7
CARHR029040 Cardamine hirsuta HOM05D004993 ORTHO05D008532 1.8e-15 87.8 99 48.5
Migut.G01033 Erythranthe guttata HOM05D004993 ORTHO05D008532 3.2e-12 77.0 50 70.0


User provided reference genes

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