Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 9.6e-74 280.0 137 100.0
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 1.1e-61 240.0 141 86.5
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 3.2e-61 238.4 141 85.8
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 4.2e-61 238.0 141 85.8
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 2.1e-60 235.7 141 84.4
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 5.2e-27 124.8 129 53.5
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 7.7e-23 110.9 138 50.0
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 1.6e-15 86.7 61 63.9
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 2.0e-15 86.3 135 44.4
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 1.5e-13 80.1 142 41.5
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 1.9e-13 79.7 89 49.4
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 1.9e-13 79.7 104 43.3
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 7.2e-13 77.8 126 42.9
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 7.2e-13 77.8 101 41.6
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 1.6e-12 76.6 101 44.6
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 1.6e-12 76.6 99 41.4
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 3.6e-12 75.5 131 38.2
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 3.6e-12 75.5 99 41.4
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 6.1e-12 74.7 106 38.7
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 6.1e-12 74.7 110 40.9
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 6.1e-12 74.7 49 65.3
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 8.0e-12 74.3 134 35.8
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 1.4e-11 73.6 48 68.8
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 1.4e-11 73.6 132 38.6
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 3.0e-11 72.4 136 41.2
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 3.0e-11 72.4 49 63.3
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 5.2e-11 71.6 50 66.0
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 8.8e-11 70.9 112 42.9
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 1.2e-10 70.5 49 59.2
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 1.2e-10 70.5 137 35.8
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 1.2e-10 70.5 51 60.8
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 3.4e-10 68.9 64 59.4
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 4.4e-10 68.6 125 36.8
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 9.8e-10 67.4 43 67.4
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 9.8e-10 67.4 115 38.3
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 9.8e-10 67.4 43 65.1
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 2.8e-09 65.9 67 47.8
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 4.8e-09 65.1 65 52.3
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 4.8e-09 65.1 65 52.3
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 4.8e-09 65.1 65 52.3
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 4.8e-09 65.1 65 52.3
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 6.3e-09 64.7 56 58.9
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 6.3e-09 64.7 56 58.9
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 6.3e-09 64.7 56 58.9
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 6.3e-09 64.7 43 60.5
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 8.3e-09 64.3 43 60.5
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 1.1e-08 63.9 65 50.8
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.1e-08 63.9 58 56.9
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 1.8e-08 63.2 64 50.0
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 2.4e-08 62.8 64 50.0
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 3.1e-08 62.4 56 57.1
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 3.1e-08 62.4 56 57.1
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 3.1e-08 62.4 44 63.6
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 4.1e-08 62.0 56 46.4
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 4.1e-08 62.0 56 46.4
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 4.1e-08 62.0 56 53.6
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 4.1e-08 62.0 56 46.4
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 4.1e-08 62.0 56 46.4
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 4.1e-08 62.0 56 46.4
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 4.1e-08 62.0 56 46.4
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 4.1e-08 62.0 42 59.5
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 7.0e-08 61.2 101 39.6
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 7.0e-08 61.2 56 44.6
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 1.2e-07 60.5 91 40.7
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 1.2e-07 60.5 91 40.7
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 1.6e-07 60.1 54 50.0
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 2.0e-07 59.7 63 50.8
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 2.7e-07 59.3 39 59.0
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 2.7e-07 59.3 48 54.2
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.7e-07 59.3 53 47.2
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 2.7e-07 59.3 40 60.0
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 3.5e-07 58.9 63 47.6
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 4.5e-07 58.5 48 50.0
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 7.7e-07 57.8 39 56.4
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 1.3e-06 57.0 133 34.6
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 2.3e-06 56.2 48 47.9
Ciclev10017153m.g Citrus clementina HOM05D007757 ORTHO05D009619 6.6e-06 54.7 113 32.7


User provided reference genes

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