Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 4.3e-245 850.9 428 100.0
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 3.4e-210 734.9 395 93.7
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 2.1e-196 689.1 401 85.0
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 6.2e-188 661.0 387 84.5
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 2.5e-181 639.0 382 81.2
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 2.5e-181 639.0 382 81.2
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 1.1e-179 633.6 396 79.0
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.3e-177 626.7 379 82.1
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 9.4e-176 620.5 386 79.0
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.6e-175 619.8 356 88.2
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.6e-175 619.8 379 81.0
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 2.7e-175 619.0 386 78.5
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 6.1e-175 617.8 379 80.7
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 5.1e-174 614.8 386 79.0
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 6.7e-174 614.4 379 78.9
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 1.5e-173 613.2 379 79.7
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.9e-173 612.8 378 79.1
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 4.3e-173 611.7 383 79.1
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 4.3e-173 611.7 408 74.8
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 2.8e-172 609.0 376 80.3
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 3.7e-172 608.6 379 79.7
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 6.3e-172 607.8 382 79.6
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.1e-171 607.1 379 78.4
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 9.1e-171 604.0 395 75.4
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 1.5e-170 603.2 379 78.9
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 4.5e-170 601.7 379 77.8
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 4.5e-170 601.7 381 76.1
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 5.9e-170 601.3 395 76.2
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 5.9e-170 601.3 382 78.0
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 7.7e-170 600.9 379 77.6
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 1.7e-169 599.7 379 78.1
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 2.2e-169 599.4 388 75.0
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 5.0e-169 598.2 379 78.1
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.4e-168 596.7 396 75.3
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.9e-168 596.3 382 78.0
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 2.5e-168 595.9 378 76.2
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 2.5e-168 595.9 384 76.0
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 3.2e-168 595.5 429 70.6
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 9.4e-168 594.0 378 77.8
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 9.4e-168 594.0 378 77.8
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 2.7e-167 592.4 383 76.2
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 4.7e-167 591.7 384 75.3
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 1.0e-166 590.5 378 75.4
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 1.4e-166 590.1 379 75.7
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.3e-166 589.3 385 74.8
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 3.9e-166 588.6 379 77.0
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 5.1e-166 588.2 382 76.2
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 6.7e-166 587.8 397 72.8
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 1.5e-165 586.6 379 77.3
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.5e-165 586.6 383 76.0
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 3.3e-165 585.5 377 75.9
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 7.4e-165 584.3 381 76.6
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 4.8e-164 581.6 379 75.2
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 6.3e-164 581.3 406 73.4
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 8.2e-164 580.9 387 75.5
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 2.4e-163 579.3 388 75.8
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 3.1e-163 578.9 379 73.4
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.2e-162 577.0 390 74.4
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 1.5e-162 576.6 387 73.4
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 2.0e-162 576.2 383 74.2
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 2.6e-162 575.9 381 74.3
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 3.8e-161 572.0 511 60.9
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 3.8e-161 572.0 379 76.0
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 6.5e-161 571.2 380 72.9
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 6.5e-161 571.2 380 72.9
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 8.5e-161 570.9 381 72.4
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 4.2e-160 568.5 382 72.3
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 5.5e-160 568.2 383 74.2
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 8.0e-159 564.3 295 94.6
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 3.9e-158 562.0 376 71.8
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 6.7e-158 561.2 380 71.6
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.1e-157 560.5 381 71.4
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.1e-157 560.5 382 71.5
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 9.7e-157 557.4 382 70.9
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.3e-156 557.0 379 72.6
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 4.8e-156 555.1 385 70.6
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 3.1e-155 552.4 378 68.8
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 4.1e-155 552.0 295 92.5
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 2.0e-154 549.7 377 70.3
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 5.9e-154 548.1 377 70.3
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 1.0e-153 547.4 377 70.8
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.2e-152 542.3 311 88.1
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 5.5e-152 541.6 377 73.5
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 1.2e-151 540.4 384 71.4
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.0e-150 537.3 383 70.0
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 5.2e-150 535.0 383 70.2
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 2.6e-149 532.7 381 67.7
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 2.6e-149 532.7 381 69.0
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 3.3e-149 532.3 380 69.7
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 2.2e-148 529.6 344 76.2
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 2.8e-148 529.3 427 64.9
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 3.7e-148 528.9 355 73.0
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 9.1e-147 524.2 378 70.1
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.0e-146 523.1 381 65.6
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.7e-146 522.7 383 66.3
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 2.2e-145 519.6 379 70.4
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 5.0e-145 518.5 308 83.1
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 9.4e-144 514.2 379 67.0
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.0e-142 510.8 382 65.4
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.8e-137 492.3 395 68.9
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 5.5e-136 488.4 322 78.0
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 2.8e-127 459.5 330 70.6
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 3.5e-122 442.6 385 61.8
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 5.6e-120 435.3 307 72.0
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 6.2e-119 431.8 265 79.6
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 3.2e-115 419.5 382 54.7
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 6.0e-114 415.2 381 55.4
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.9e-108 396.4 232 81.9
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.1e-107 394.4 381 54.1
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.3e-105 387.5 382 51.3
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 2.5e-104 383.3 265 70.6
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.5e-104 383.3 401 48.6
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 6.6e-97 358.6 272 67.3
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 9.3e-91 338.2 236 72.9
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 2.4e-70 270.4 221 61.5
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.9e-64 250.8 147 81.6
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 7.2e-59 232.3 430 35.3
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 1.1e-56 224.9 395 35.4
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 1.7e-55 221.1 418 36.4
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 1.4e-54 218.0 147 75.5
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.1e-50 204.1 153 65.4
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 5.0e-44 183.0 115 78.3
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 4.1e-38 163.3 110 68.2
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 3.7e-31 140.2 184 42.9
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.7e-23 114.8 64 84.4
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 1.2e-21 108.6 147 47.6
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 7.7e-21 105.9 73 71.2
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.9e-19 101.3 138 39.9
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.8e-18 97.4 146 39.0
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 4.0e-17 93.6 68 66.2
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.0e-12 79.0 70 54.3
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 1.3e-12 78.6 109 38.5
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 1.9e-11 74.7 36 97.2
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-11 73.2 72 50.0
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 2.3e-09 67.8 36 88.9
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 3.1e-09 67.4 91 41.8
SMO201G0205 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 4.1e-06 57.0 55 47.3


User provided reference genes

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