Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.3e-128 463.0 225 100.0
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-124 449.9 225 95.6
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.8e-122 442.6 225 94.7
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.8e-122 442.6 225 94.7
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.1e-122 441.4 225 93.8
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 7.0e-122 440.7 225 94.2
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.6e-121 439.5 225 93.8
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 9.1e-114 413.7 225 87.6
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 2.7e-113 412.1 225 87.1
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.4e-109 399.8 225 84.9
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 4.4e-108 394.8 225 86.7
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 8.3e-107 390.6 225 82.2
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 7.0e-106 387.5 225 81.3
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 7.0e-106 387.5 225 81.3
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 1.6e-105 386.3 225 80.9
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 4.5e-105 384.8 225 82.7
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 7.7e-105 384.0 225 80.0
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.9e-104 382.1 225 80.4
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 2.9e-104 382.1 225 80.9
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 3.8e-104 381.7 225 79.6
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 3.8e-104 381.7 225 80.9
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 6.6e-104 380.9 225 80.0
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.1e-103 380.2 225 80.4
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.1e-103 380.2 225 77.3
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 1.9e-103 379.4 225 77.3
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.3e-103 378.6 225 80.4
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 4.2e-103 378.3 225 78.7
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 5.6e-103 377.9 223 80.3
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 5.6e-103 377.9 225 80.4
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 7.2e-103 377.5 224 79.5
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 7.2e-103 377.5 225 77.3
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 7.2e-103 377.5 225 76.9
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.2e-102 376.7 223 78.0
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.1e-102 374.4 226 79.6
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.1e-102 374.4 226 79.6
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 8.0e-102 374.0 225 80.0
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.4e-101 373.2 225 80.0
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 3.0e-101 372.1 225 77.3
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.0e-101 371.7 225 79.1
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 5.2e-101 371.3 279 67.7
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.2e-100 370.2 225 76.0
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.5e-100 369.8 225 79.1
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.5e-100 369.8 225 80.0
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.0e-100 369.4 225 79.1
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 2.0e-100 369.4 226 78.3
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.4e-100 368.2 225 78.7
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 5.7e-100 367.9 225 77.3
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 5.7e-100 367.9 224 79.0
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 6.4e-99 364.4 225 76.9
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 1.1e-98 363.6 225 76.0
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 1.4e-98 363.2 225 77.8
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 7.0e-98 360.9 225 74.7
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 7.0e-98 360.9 225 75.6
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.6e-97 359.8 226 74.3
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 1.6e-97 359.8 225 76.0
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 4.6e-97 358.2 225 76.4
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 7.8e-97 357.5 225 75.1
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.0e-96 357.1 225 75.1
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.0e-96 357.1 225 75.1
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.7e-96 356.3 225 73.3
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 6.6e-96 354.4 226 73.9
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 8.6e-96 354.0 260 67.3
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 73.3
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 73.3
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 72.4
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.1e-94 349.4 225 73.8
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 2.1e-94 349.4 225 72.9
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 74.2
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 4.7e-94 348.2 197 83.2
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 6.2e-94 347.8 225 73.8
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 8.0e-94 347.4 225 73.8
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 72.9
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 72.9
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 72.0
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 72.0
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 5.2e-93 344.7 197 81.7
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 6.8e-93 344.4 225 72.4
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.2e-92 343.6 266 65.0
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 2.0e-92 342.8 227 72.7
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 2.6e-92 342.4 225 72.0
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 5.8e-92 341.3 225 71.6
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 71.6
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 71.6
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 71.6
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 72.4
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 72.0
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 4.9e-91 338.2 228 71.1
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 6.4e-91 337.8 232 69.4
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 8.3e-91 337.4 226 72.6
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.1e-90 337.0 225 72.0
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 2.7e-89 332.4 208 75.5
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 7.8e-89 330.9 228 70.2
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 7.8e-89 330.9 225 68.0
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 73.3
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 70.2
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 2.8e-86 322.4 225 68.9
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 6.2e-86 321.2 225 70.7
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 8.1e-86 320.9 225 68.9
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 3.1e-85 318.9 227 66.5
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 3.1e-85 318.9 227 66.1
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 6.8e-85 317.8 225 68.4
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 4.4e-84 315.1 225 70.7
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.7e-83 313.2 225 65.3
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.2e-81 307.0 217 67.3
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.1e-79 300.4 225 67.1
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 1.9e-79 299.7 177 81.4
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 2.0e-76 289.7 228 63.6
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 4.9e-75 285.0 228 61.8
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 1.2e-73 280.4 222 59.5
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.6e-73 280.0 225 63.1
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 7.8e-73 277.7 225 64.4
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 3.0e-72 275.8 174 75.3
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 2.1e-70 269.6 260 55.4
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 2.1e-70 269.6 260 55.4
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 6.2e-70 268.1 245 56.7
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 6.2e-70 268.1 204 63.2
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.8e-69 266.5 226 58.8
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 7.1e-66 254.6 229 59.4
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 9.3e-66 254.2 122 95.9
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 5.1e-64 248.4 225 53.8
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 5.6e-63 245.0 250 54.8
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.1e-55 220.7 225 50.2
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 2.5e-55 219.5 164 65.2
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 7.4e-55 218.0 225 51.6
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 1.9e-50 203.4 227 46.3
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 5.3e-45 185.3 228 44.3
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 5.8e-44 181.8 231 44.2
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 2.2e-43 179.9 205 44.9
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 9.6e-39 164.5 130 60.8
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.3e-38 161.8 105 74.3
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.8e-37 160.2 105 73.3
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 3.4e-36 156.0 207 44.4
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 3.9e-32 142.5 150 51.3
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 5.5e-26 122.1 72 75.0
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 4.8e-22 109.0 105 57.1
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 5.3e-21 105.5 77 57.1
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 3.4e-20 102.8 122 47.5
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.5e-19 98.2 51 86.3
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.5e-19 98.2 51 86.3
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.1e-18 97.8 79 62.0
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-18 97.1 51 86.3
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.7e-17 93.2 57 78.9
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 2.6e-15 86.7 76 60.5
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 4.4e-15 85.9 74 51.4
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.6e-12 77.4 51 78.4
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 3.5e-12 76.3 51 72.5
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 7.7e-12 75.1 51 70.6
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 5.0e-11 72.4 223 29.1
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 9.4e-10 68.2 59 55.9
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 3.0e-08 63.2 51 64.7


User provided reference genes

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