Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 6.0e-240 833.9 474 100.0
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.3e-186 656.8 488 81.4
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 1.1e-185 653.7 482 84.2
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.6e-184 648.3 482 82.8
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.0e-183 647.1 482 83.8
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 6.7e-175 617.8 482 81.3
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 2.0e-163 579.7 497 74.0
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 1.6e-160 570.1 494 73.5
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 1.3e-157 560.5 480 75.2
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 4.1e-148 528.9 482 69.1
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 1.8e-143 513.5 427 72.6
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 4.4e-142 508.8 419 69.2
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 2.6e-134 483.0 495 62.2
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 1.3e-133 480.7 417 69.1
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.7e-133 479.2 490 64.9
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.1e-132 477.6 422 68.2
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 1.4e-132 477.2 472 65.5
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 3.2e-132 476.1 420 67.6
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 4.1e-132 475.7 453 66.0
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 9.2e-132 474.6 428 69.6
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.6e-131 473.8 499 59.7
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.7e-131 473.0 498 61.2
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 5.9e-131 471.9 469 66.7
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.0e-130 471.1 469 67.0
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 3.0e-130 469.5 479 61.8
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 3.0e-130 469.5 420 67.6
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 5.0e-130 468.8 426 69.2
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 1.1e-129 467.6 423 68.1
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 2.5e-129 466.5 419 67.3
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 2.5e-129 466.5 428 66.4
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.6e-129 465.3 290 90.7
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 5.6e-129 465.3 421 67.9
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.6e-128 463.8 378 75.9
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 4.7e-128 462.2 455 67.3
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 4.7e-128 462.2 656 50.6
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 6.2e-128 461.8 424 67.0
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.8e-127 460.3 458 65.3
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 2.3e-127 459.9 484 64.0
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 3.1e-127 459.5 489 64.4
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 5.2e-127 458.8 481 63.8
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 3.4e-126 456.1 426 69.2
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 4.9e-125 452.2 431 64.0
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 9.2e-124 448.0 415 66.5
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 1.2e-123 447.6 431 64.7
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 1.2e-123 447.6 421 65.3
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 2.0e-123 446.8 445 60.9
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 1.7e-122 443.7 425 66.4
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 9.5e-121 438.0 418 65.1
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 4.7e-120 435.6 431 60.1
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 2.0e-118 430.3 420 65.0
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 9.9e-118 427.9 489 61.1
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 3.7e-117 426.0 429 63.2
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 3.7e-117 426.0 419 65.9
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 8.3e-117 424.9 419 64.4
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 1.1e-116 424.5 426 63.1
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 2.1e-115 420.2 409 64.5
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 2.7e-115 419.9 421 63.9
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 4.6e-115 419.1 429 61.8
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 1.0e-114 417.9 386 67.9
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 1.3e-114 417.5 419 64.9
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 2.3e-114 416.8 486 57.8
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 1.5e-113 414.1 487 56.7
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 1.2e-112 411.0 418 63.4
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 2.8e-112 409.8 483 57.3
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 1.4e-111 407.5 427 62.8
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 1.8e-111 407.1 478 60.7
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 3.1e-111 406.4 408 64.0
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 8.9e-111 404.8 419 62.5
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 1.2e-110 404.4 491 58.5
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 1.5e-110 404.1 438 60.5
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.7e-109 400.6 412 63.1
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 2.2e-109 400.2 468 59.8
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 3.8e-109 399.4 489 58.1
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 4.9e-109 399.1 475 59.2
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 5.4e-108 395.6 415 62.7
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 2.7e-107 393.3 501 55.9
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 2.7e-107 393.3 501 55.9
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 1.3e-106 391.0 421 61.8
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 1.3e-106 391.0 476 56.7
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.3e-106 391.0 467 60.4
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 5.1e-106 389.0 431 58.0
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 4.3e-105 386.0 472 58.7
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 2.8e-104 383.3 489 57.1
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 4.0e-103 379.4 437 57.4
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 5.2e-103 379.0 482 52.5
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 5.8e-102 375.6 421 60.6
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 4.5e-94 349.4 427 56.4
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 7.6e-94 348.6 379 58.3
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.3e-93 347.8 458 51.7
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.3e-93 347.8 458 51.7
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 3.8e-93 346.3 418 52.9
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 1.1e-92 344.7 437 57.7
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 2.4e-92 343.6 292 69.9
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 2.3e-90 337.0 378 59.8
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 2.5e-89 333.6 406 57.6
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 1.1e-87 328.2 426 52.3
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 4.0e-87 326.2 628 44.7
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 1.5e-86 324.3 322 65.2
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 3.2e-84 316.6 455 49.2
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 1.9e-81 307.4 292 64.0
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 6.9e-79 298.9 296 64.2
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 4.9e-77 292.7 293 63.5
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-76 291.6 474 50.6
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 2.1e-75 287.3 279 64.9
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 1.6e-72 277.7 284 60.2
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 2.6e-70 270.4 350 50.6
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 2.2e-69 267.3 482 45.0
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 3.0e-66 256.9 323 53.3
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 9.1e-63 245.4 382 47.9
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 1.3e-61 241.5 189 69.8
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 2.1e-59 234.2 330 53.0
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 5.7e-57 226.1 419 46.1
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 1.0e-50 205.3 258 63.2
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 5.2e-50 203.0 366 48.1
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 1.3e-45 188.3 548 33.6
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 7.0e-39 166.0 101 81.2
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.5e-38 163.3 147 75.5
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 5.5e-36 156.4 103 79.6
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.0e-34 152.1 201 50.7
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.4e-33 147.1 119 70.6
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 8.3e-32 142.5 87 86.2
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 7.7e-30 136.0 371 30.7
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 5.5e-28 129.8 317 41.6
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 7.2e-28 129.4 176 62.5
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 1.3e-24 118.6 87 69.0
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 1.6e-22 111.7 95 76.8
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.6e-22 111.7 54 96.3
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 6.6e-21 106.3 93 74.2
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.2e-15 87.4 96 56.2
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 4.1e-15 87.0 64 70.3
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 7.0e-15 86.3 80 57.5
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 1.6e-14 85.1 100 53.0
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 6.2e-11 73.2 88 50.0
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 3.4e-09 67.4 90 47.8
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 4.4e-09 67.0 210 27.1
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 2.2e-08 64.7 43 74.4
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.6e-06 58.5 39 76.9
C09p44560 Brassica napus HOM05D041588 ORTHO05D006779 7.8e-06 56.2 62 56.5


User provided reference genes

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