Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 7.4e-130 467.2 238 100.0
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 8.4e-118 427.2 238 91.2
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 1.0e-99 367.1 240 79.6
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 5.0e-94 348.2 238 76.1
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.0e-90 336.3 202 87.6
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.0e-90 336.3 202 87.6
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.4e-83 313.5 224 76.8
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.0e-78 297.4 227 67.8
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.1e-77 293.9 230 63.0
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 1.4e-75 287.0 229 62.0
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 1.8e-75 286.6 231 62.8
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 2.8e-73 279.3 224 65.6
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 6.3e-73 278.1 235 60.4
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 7.0e-72 274.6 211 64.9
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 1.7e-70 270.0 227 62.6
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.7e-70 270.0 232 59.1
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.5e-69 266.9 229 60.7
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 6.1e-68 261.5 223 60.1
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 1.0e-67 260.8 225 58.7
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.4e-67 260.4 213 62.0
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 2.3e-67 259.6 223 61.0
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 3.0e-67 259.2 225 60.4
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 3.0e-67 259.2 228 57.0
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 3.0e-67 259.2 225 60.4
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.2e-66 257.3 228 56.6
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.2e-66 257.3 223 60.1
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.0e-66 256.5 225 60.0
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 2.0e-66 256.5 225 57.3
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 2.6e-66 256.1 199 63.8
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 4.4e-66 255.4 165 80.6
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 5.7e-66 255.0 228 58.8
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 7.5e-66 254.6 234 54.3
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 7.5e-66 254.6 225 57.8
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 2.2e-65 253.1 199 66.3
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 4.9e-65 251.9 224 58.9
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.1e-64 250.8 224 59.4
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 2.4e-64 249.6 199 64.8
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 3.1e-64 249.2 222 58.1
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 2.0e-63 246.5 225 57.3
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 4.5e-63 245.4 200 64.0
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 4.5e-63 245.4 222 54.5
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 7.8e-63 244.6 225 56.4
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 7.8e-63 244.6 222 57.2
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 1.0e-62 244.2 224 56.7
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 2.9e-62 242.7 224 57.1
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 1.5e-61 240.4 234 53.4
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 3.3e-61 239.2 224 55.4
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.6e-60 236.9 173 66.5
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 3.6e-60 235.7 225 55.6
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 4.7e-60 235.3 225 55.6
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 1.8e-59 233.4 227 54.2
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 2.3e-59 233.0 224 54.9
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 2.0e-58 229.9 232 52.2
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 3.7e-57 225.7 226 54.9
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 1.4e-56 223.8 202 57.4
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 5.4e-56 221.9 183 61.7
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 2.0e-55 219.9 223 50.2
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 1.1e-53 214.2 234 49.1
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.5e-53 213.8 201 56.2
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 3.3e-53 212.6 213 53.5
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 3.6e-52 209.1 230 50.9
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 6.8e-51 204.9 228 46.5
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 6.4e-49 198.4 203 48.3
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 4.3e-45 185.7 155 60.0
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 5.6e-45 185.3 184 53.3
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.1e-43 181.0 199 49.2
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 9.9e-42 174.5 224 44.2
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 2.2e-41 173.3 131 66.4
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 9.2e-40 167.9 224 42.9
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.6e-39 167.2 112 72.3
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.0e-38 162.9 163 49.1
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 7.3e-37 158.3 171 53.2
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.6e-36 156.0 121 62.8
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.6e-36 156.0 121 62.8
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.8e-35 153.7 136 59.6
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.8e-35 153.7 125 63.2
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.0e-34 150.2 116 66.4
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.6e-31 139.0 137 53.3
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 1.7e-30 137.1 121 61.2
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.7e-30 137.1 126 57.1
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 2.5e-29 133.3 109 59.6
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 1.6e-28 130.6 112 62.5
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.6e-28 129.4 137 50.4
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 4.7e-28 129.0 107 61.7
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 4.0e-27 125.9 106 60.4
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 4.0e-27 125.9 102 63.7
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 5.8e-26 122.1 142 50.7
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 8.4e-25 118.2 90 67.8
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.1e-24 117.9 115 50.4
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 4.2e-24 115.9 133 46.6
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 7.1e-24 115.2 120 53.3
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 1.6e-23 114.0 72 75.0
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 2.3e-22 110.2 131 48.9
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 8.1e-20 101.7 77 62.3
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 1.4e-19 100.9 103 48.5
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.0e-19 99.4 66 72.7
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 5.3e-19 99.0 74 64.9
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 9.0e-19 98.2 221 26.7
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 2.4e-16 90.1 129 41.9
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 1.2e-15 87.8 175 29.1
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.7e-15 86.7 103 41.7
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 7.9e-15 85.1 91 41.8
MD17G1182100 Malus domestica HOM05D007520 ORTHO05D009417 4.2e-08 62.8 39 76.9
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 9.3e-08 61.6 84 36.9


User provided reference genes

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