Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 6.2e-58 227.3 115 100.0
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.4e-41 172.2 115 80.0
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.4e-41 172.2 115 80.0
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 3.4e-40 168.3 119 79.0
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.3e-39 166.4 119 78.2
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.7e-39 166.0 119 77.3
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.8e-39 164.9 119 78.2
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 4.1e-09 65.1 68 57.4
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 4.1e-09 65.1 68 57.4
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 4.1e-09 65.1 68 57.4
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 4.1e-09 65.1 68 57.4
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 4.1e-09 65.1 68 57.4
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 4.1e-09 65.1 68 57.4
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 6.9e-09 64.3 84 42.9
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 9.1e-09 63.9 84 42.9
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 1.5e-08 63.2 66 57.6
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 2.6e-08 62.4 73 47.9
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 4.5e-08 61.6 86 46.5
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 4.5e-08 61.6 77 48.1
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 5.9e-08 61.2 68 52.9
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 7.7e-08 60.8 76 43.4
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 7.7e-08 60.8 106 39.6
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 7.7e-08 60.8 82 45.1
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 1.0e-07 60.5 106 39.6
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 1.0e-07 60.5 65 52.3
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 1.0e-07 60.5 81 45.7
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 1.3e-07 60.1 84 45.2
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 1.3e-07 60.1 77 46.8
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 1.7e-07 59.7 44 65.9
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 1.7e-07 59.7 85 44.7
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 2.2e-07 59.3 72 51.4
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 2.2e-07 59.3 48 60.4
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 2.2e-07 59.3 85 43.5
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 2.2e-07 59.3 48 60.4
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 2.9e-07 58.9 80 46.2
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 2.9e-07 58.9 77 45.5
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 3.8e-07 58.5 98 38.8
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 3.8e-07 58.5 44 63.6
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 3.8e-07 58.5 87 47.1
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 3.8e-07 58.5 86 43.0
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 3.8e-07 58.5 44 65.9
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 3.8e-07 58.5 43 65.1
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 3.8e-07 58.5 60 55.0
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 5.0e-07 58.2 81 45.7
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 5.0e-07 58.2 93 38.7
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 5.0e-07 58.2 45 60.0
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 5.0e-07 58.2 45 62.2
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 5.0e-07 58.2 50 58.0
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 6.5e-07 57.8 45 62.2
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 6.5e-07 57.8 81 48.1
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 6.5e-07 57.8 50 58.0
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 6.5e-07 57.8 79 44.3
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 6.5e-07 57.8 71 47.9
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 6.5e-07 57.8 55 50.9
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 6.5e-07 57.8 42 66.7
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 8.5e-07 57.4 76 46.1
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 8.5e-07 57.4 84 46.4
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 8.5e-07 57.4 73 50.7
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 8.5e-07 57.4 54 59.3
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.1e-06 57.0 81 49.4
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 1.4e-06 56.6 74 47.3
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 1.4e-06 56.6 74 47.3
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 1.4e-06 56.6 44 59.1
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.4e-06 56.6 84 45.2
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 1.4e-06 56.6 61 49.2
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 1.4e-06 56.6 48 58.3
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 1.4e-06 56.6 48 58.3
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 1.4e-06 56.6 48 56.2
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.9e-06 56.2 66 48.5
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 1.9e-06 56.2 62 53.2
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 2.5e-06 55.8 86 44.2
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 2.5e-06 55.8 55 49.1
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 2.5e-06 55.8 55 49.1
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 2.5e-06 55.8 55 49.1
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 2.5e-06 55.8 96 44.8
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.5e-06 55.8 44 61.4
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 3.2e-06 55.5 100 40.0
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 5.5e-06 54.7 72 44.4
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 5.5e-06 54.7 54 57.4
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 5.5e-06 54.7 96 37.5
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 7.2e-06 54.3 62 45.2
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 7.2e-06 54.3 89 39.3
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 9.4e-06 53.9 41 65.9
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 9.4e-06 53.9 53 50.9
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 9.4e-06 53.9 53 50.9
Potri.006G060800 Populus trichocarpa HOM05D001268 ORTHO05D001577 9.4e-06 53.9 61 47.5
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 9.4e-06 53.9 45 57.8


User provided reference genes

Program Settings