Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 0.0e+00 1407.5 841 100.0
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 0.0e+00 1146.0 799 82.6
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 1.8e-304 1049.3 786 79.8
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 1.1e-245 854.0 648 82.3
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 5.7e-210 735.3 872 55.6
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 3.7e-185 652.9 827 54.9
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 4.0e-179 632.9 911 50.4
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 4.4e-178 629.4 854 51.4
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 2.3e-171 607.1 940 47.6
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 9.8e-170 601.7 708 62.0
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 1.2e-167 594.7 772 51.3
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 1.2e-154 551.6 902 46.9
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 7.1e-152 542.3 684 52.9
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 2.8e-148 530.4 767 47.7
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 5.8e-146 522.7 901 44.2
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 1.3e-142 511.5 873 47.0
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 1.7e-142 511.1 892 45.9
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 3.3e-141 506.9 933 43.9
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 3.6e-140 503.4 771 48.5
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 1.4e-139 501.5 554 55.4
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 9.0e-139 498.8 941 47.0
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 1.2e-138 498.4 924 44.6
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 1.4e-136 491.5 796 44.7
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 2.4e-136 490.7 865 43.4
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 7.1e-136 489.2 922 42.5
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 2.1e-135 487.6 784 43.9
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 1.4e-131 474.9 924 42.3
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 4.0e-131 473.4 930 42.0
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 3.4e-130 470.3 856 42.4
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 5.8e-130 469.5 826 43.9
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 2.9e-129 467.2 815 43.9
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 1.4e-128 464.9 898 41.8
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 7.1e-128 462.6 821 45.3
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 9.3e-128 462.2 813 43.8
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 1.2e-127 461.8 815 43.6
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 1.3e-126 458.4 856 42.6
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 1.8e-123 448.0 770 44.4
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 1.4e-115 421.8 898 41.1
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 2.6e-114 417.5 879 40.6
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 8.4e-113 412.5 872 42.0
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 1.4e-112 411.8 908 40.0
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 3.2e-112 410.6 817 42.0
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 7.9e-111 406.0 869 41.2
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 1.3e-110 405.2 841 41.4
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 2.3e-110 404.4 894 41.3
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 2.5e-109 401.0 809 41.4
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.8e-107 394.8 756 41.8
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 9.0e-107 392.5 790 43.0
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 3.4e-106 390.6 824 39.9
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 7.7e-106 389.4 783 41.9
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 5.0e-105 386.7 766 41.6
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 6.1e-103 379.8 640 45.5
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.0e-102 379.0 778 40.7
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 1.4e-102 378.6 783 41.8
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 3.3e-101 374.0 822 38.1
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 1.1e-99 369.0 745 39.9
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 3.4e-98 364.0 793 40.2
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 5.0e-97 360.1 795 39.0
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 1.9e-96 358.2 744 40.7
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 2.5e-96 357.8 921 38.8
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 1.6e-95 355.1 854 37.2
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 3.3e-93 347.4 831 38.7
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 1.7e-92 345.1 763 39.1
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 9.4e-88 329.3 804 39.6
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 6.1e-87 326.6 912 35.7
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 1.7e-84 318.5 726 38.6
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 2.2e-84 318.2 669 41.0
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 1.4e-83 315.5 929 36.6
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 4.1e-83 313.9 878 37.6
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 2.5e-80 304.7 696 37.2
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 3.2e-80 304.3 472 46.6
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 3.6e-79 300.8 793 38.5
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 8.3e-76 289.7 863 37.7
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 5.5e-72 276.9 780 35.6
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 1.0e-70 272.7 656 38.7
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 2.3e-70 271.6 899 35.4
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 4.9e-68 263.8 769 34.1
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 1.6e-63 248.8 849 33.8
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 1.5e-61 242.3 618 37.1
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 2.0e-61 241.9 754 33.6
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 2.2e-60 238.4 726 34.7
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 1.5e-56 225.7 773 31.7
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 3.4e-53 214.5 744 31.5
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 5.8e-53 213.8 843 34.3
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 9.2e-51 206.5 746 31.6
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 3.5e-50 204.5 749 31.1
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 2.1e-47 195.3 424 41.3
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 6.8e-46 190.3 733 32.9
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 1.5e-45 189.1 779 31.7
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 5.4e-43 180.6 783 29.4
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 2.1e-42 178.7 760 29.7
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 2.3e-41 175.3 702 30.8
TPR.G3025 Trifolium pratense HOM05D002002 ORTHO05D008797 2.3e-41 175.3 264 46.2
Sed0026296 Sechium edule HOM05D002002 ORTHO05D008797 6.6e-41 173.7 369 38.2
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 8.6e-41 173.3 814 30.6
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 7.3e-40 170.2 527 34.7
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 3.1e-38 164.9 756 30.7
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 6.8e-38 163.7 778 30.7
BcaB05g24599 Brassica carinata HOM05D002002 ORTHO05D008797 2.0e-37 162.2 739 28.8
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 1.9e-35 155.6 565 33.8
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 3.9e-33 147.9 699 29.2
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 3.9e-33 147.9 699 29.2
Lj6A812T43 Lonicera japonica HOM05D002002 ORTHO05D008797 6.6e-33 147.1 364 36.3
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 5.2e-30 137.5 752 28.5
TPR.G2569 Trifolium pratense HOM05D002002 ORTHO05D008797 4.9e-28 131.0 146 54.8
TPR.G1066 Trifolium pratense HOM05D002002 ORTHO05D008797 3.2e-19 101.7 118 53.4
Solyc05g013490.4 Solanum lycopersicum HOM05D002002 ORTHO05D008797 1.8e-17 95.9 261 34.5
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 3.0e-17 95.1 247 37.7
unitig_26.g10410 Utricularia gibba HOM05D002002 ORTHO05D008797 3.3e-16 91.7 174 43.1
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 6.9e-14 84.0 517 30.2
TPR.G3084 Trifolium pratense HOM05D002002 ORTHO05D012248 6.4e-12 77.4 116 44.0
Lj6P812T17 Lonicera japonica HOM05D002002 ORTHO05D008797 4.2e-11 74.7 82 57.3
TPR.G24664 Trifolium pratense HOM05D002002 ORTHO05D008797 5.5e-11 74.3 74 52.7
Pp3c22_14720 Physcomitrium patens HOM05D002002 ORTHO05D008797 1.6e-07 62.8 781 22.9
Lsat_1_v5_gn_0_41981 Lactuca sativa HOM05D002002 ORTHO05D008797 9.0e-06 57.0 115 38.3


User provided reference genes

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