Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.2e-283 979.2 487 100.0
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 2.3e-279 964.9 487 97.7
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 4.1e-276 954.1 487 96.1
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.5e-275 952.2 487 95.3
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 6.5e-274 946.8 487 95.5
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 2.8e-269 931.4 480 94.2
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 3.7e-269 931.0 486 93.2
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 6.3e-269 930.2 486 94.4
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.4e-268 928.3 487 91.8
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 2.4e-268 928.3 487 92.2
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 9.1e-268 926.4 487 91.2
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.2e-267 926.0 487 90.8
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 1.5e-267 925.6 485 92.8
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.0e-267 925.2 487 91.8
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 2.6e-267 924.9 484 92.1
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.4e-267 924.5 487 91.2
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 3.4e-267 924.5 486 92.0
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 4.5e-267 924.1 485 91.8
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 5.9e-267 923.7 484 92.4
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.7e-266 922.2 487 91.2
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 3.8e-266 921.0 486 91.8
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 3.8e-266 921.0 487 91.6
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.8e-266 921.0 486 92.4
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 8.5e-266 919.8 487 91.0
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.1e-265 919.5 487 93.2
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.1e-265 919.5 484 91.5
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.4e-265 919.1 487 93.2
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.4e-265 919.1 486 91.8
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.9e-265 918.7 485 92.2
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 1.9e-265 918.7 484 91.5
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 1.9e-265 918.7 487 91.8
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 2.5e-265 918.3 487 91.0
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 3.2e-265 917.9 487 91.0
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 4.2e-265 917.5 487 92.8
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 5.5e-265 917.1 487 91.0
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 5.5e-265 917.1 487 91.2
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 5.5e-265 917.1 486 91.8
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 9.4e-265 916.4 487 92.2
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 9.4e-265 916.4 487 92.8
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 9.4e-265 916.4 487 90.8
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 9.4e-265 916.4 487 90.8
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-264 916.0 487 92.6
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.6e-264 915.6 484 92.1
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 1.6e-264 915.6 487 92.6
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 1.6e-264 915.6 484 91.1
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.6e-264 915.6 487 92.6
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 2.7e-264 914.8 487 92.6
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 2.7e-264 914.8 484 91.1
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 2.7e-264 914.8 484 91.3
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.7e-264 914.8 483 91.3
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 3.6e-264 914.4 487 92.8
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 4.7e-264 914.1 486 92.6
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.7e-264 914.1 487 89.7
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 4.7e-264 914.1 486 90.5
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 6.1e-264 913.7 487 90.8
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.0e-263 912.9 484 91.7
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 1.0e-263 912.9 486 91.4
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 1.0e-263 912.9 486 91.4
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.4e-263 912.5 486 91.2
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.8e-263 912.1 486 92.4
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-263 912.1 486 91.8
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.8e-263 912.1 484 90.7
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.3e-263 911.8 485 90.9
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 3.9e-263 911.0 484 92.8
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.9e-263 911.0 486 91.8
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.9e-263 911.0 487 90.3
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 5.1e-263 910.6 487 91.6
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 5.1e-263 910.6 492 90.0
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 6.7e-263 910.2 487 89.7
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.5e-262 909.1 486 91.8
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 2.0e-262 908.7 488 91.2
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.6e-262 908.3 487 92.2
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.6e-262 908.3 486 91.2
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.6e-262 908.3 485 90.5
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 3.3e-262 907.9 489 92.4
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 4.4e-262 907.5 484 90.1
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 4.4e-262 907.5 487 88.5
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 7.4e-262 906.7 487 89.9
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 2.8e-261 904.8 487 89.7
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 6.3e-261 903.7 486 91.8
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.4e-260 902.5 487 89.1
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.8e-260 902.1 486 91.6
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 2.4e-260 901.7 485 90.5
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.4e-260 901.7 484 89.7
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.4e-260 901.7 487 91.2
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 3.1e-260 901.4 485 92.4
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.1e-260 901.4 487 91.0
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 4.1e-260 901.0 486 91.4
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 5.3e-260 900.6 486 91.2
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 5.3e-260 900.6 487 91.4
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 5.3e-260 900.6 477 92.0
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 7.0e-260 900.2 479 90.6
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.2e-259 899.4 485 89.5
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 1.6e-259 899.0 481 91.7
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 2.6e-259 898.3 493 90.9
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.3e-258 896.0 488 91.6
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 3.8e-258 894.4 487 89.7
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 6.5e-258 893.6 482 89.8
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.5e-257 891.7 483 89.2
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 3.2e-257 891.3 487 92.0
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.1e-256 888.6 473 90.5
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 8.0e-256 886.7 479 90.4
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.4e-255 885.9 483 88.8
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 2.3e-255 885.2 457 95.0
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 4.0e-255 884.4 460 95.0
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 9.7e-254 879.8 437 94.3
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.1e-252 876.3 484 89.5
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 5.9e-251 870.5 460 91.5
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.5e-246 855.9 436 91.7
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.2e-245 852.0 430 92.8
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 1.2e-243 846.3 480 82.7
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 2.0e-243 845.5 436 90.6
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.5e-243 844.7 430 92.3
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 7.7e-243 843.6 439 90.9
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 1.2e-238 829.7 434 89.2
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 5.7e-238 827.4 431 88.9
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 2.2e-237 825.5 407 95.1
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.8e-236 822.4 408 94.9
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.6e-235 819.3 406 94.8
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 5.9e-235 817.4 405 94.8
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 3.3e-233 811.6 407 93.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.4e-228 796.2 433 85.7
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 3.9e-226 788.1 486 80.9
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 9.8e-222 773.5 384 95.6
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 3.5e-219 765.0 427 82.9
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 4.6e-219 764.6 436 82.3
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 1.3e-218 763.1 421 82.9
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 2.1e-208 729.2 481 78.0
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 6.2e-208 727.6 392 88.0
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 9.9e-206 720.3 393 88.3
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.9e-193 679.5 486 74.5
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 2.1e-192 676.0 369 91.1
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.4e-188 663.3 346 91.0
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.5e-185 652.5 487 72.5
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.3e-184 650.2 486 72.2
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 4.5e-182 641.7 395 74.4
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.9e-182 640.6 486 71.6
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 4.3e-177 625.2 315 94.0
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 2.4e-167 592.8 331 88.2
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.7e-146 521.5 279 88.5
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.2e-140 502.7 351 72.4
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 2.9e-125 453.0 275 76.0
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.8e-115 419.9 203 97.0
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 4.4e-97 359.4 180 91.7
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.5e-94 349.7 191 85.3
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.3e-92 343.2 172 94.8
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.5e-89 334.3 171 92.4
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.1e-84 318.2 485 42.3
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.2e-73 281.6 146 89.7
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 1.6e-70 271.2 146 89.0
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 5.3e-66 256.1 164 81.7
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 4.5e-65 253.1 127 91.3
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.3e-64 251.5 127 95.3
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 4.6e-62 243.0 147 87.8
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 6.0e-54 216.1 254 44.9
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 3.3e-52 210.3 100 97.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-50 204.5 102 94.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.8e-48 196.8 127 78.0
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 4.4e-36 156.8 108 69.4
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 7.4e-36 156.0 102 76.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 9.7e-36 155.6 77 97.4
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 9.7e-36 155.6 77 97.4
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.0e-30 136.0 71 94.4
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.4e-29 135.2 69 97.1
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 1.8e-29 134.8 162 45.7
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.3e-28 130.6 68 92.6
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.2e-27 125.9 65 92.3
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.2e-27 125.9 65 92.3
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.8e-26 124.8 66 92.4
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.1e-26 123.6 66 90.9
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.7e-22 110.9 83 66.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 2.3e-21 107.8 67 70.1
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 8.8e-21 105.9 67 73.1
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 8.5e-16 89.4 168 35.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 1.5e-15 88.6 71 64.8
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 5.5e-15 86.7 72 63.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.2e-14 85.5 72 63.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 9.8e-12 75.9 61 65.6
FvH4_3g22840 Fragaria vesca HOM05D003404 ORTHO05D004052 3.3e-07 60.8 78 47.4
FvH4_4g35091 Fragaria vesca HOM05D001017 ORTHO05D014214 3.3e-07 60.8 78 47.4
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.3e-07 60.8 61 67.2
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.2e-06 58.9 61 54.1
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 8.0e-06 56.2 38 68.4


User provided reference genes

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