Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 1.3e-202 709.5 352 100.0
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 3.8e-183 644.8 354 91.2
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.8e-183 644.8 354 91.2
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 5.5e-182 641.0 355 90.7
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 5.5e-182 641.0 355 91.0
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 6.3e-170 600.9 362 83.4
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 1.2e-165 586.6 360 82.5
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 7.7e-160 567.4 352 81.2
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 9.4e-158 560.5 352 80.1
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 8.3e-154 547.4 359 78.0
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 2.4e-153 545.8 353 77.3
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 4.1e-153 545.0 354 78.0
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 2.0e-152 542.7 364 77.2
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.7e-152 542.3 354 77.7
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 2.7e-152 542.3 354 78.0
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 7.7e-152 540.8 357 76.5
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 1.0e-151 540.4 355 76.3
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 2.3e-151 539.3 366 76.5
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 3.8e-151 538.5 355 76.1
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.5e-150 536.6 360 75.8
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 4.7e-149 531.6 363 75.5
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 6.1e-149 531.2 367 76.3
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.8e-148 529.6 360 75.0
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 6.8e-148 527.7 367 74.7
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 8.9e-148 527.3 365 75.9
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 8.9e-148 527.3 365 75.9
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.5e-147 526.6 355 75.8
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 1.5e-147 526.6 366 74.0
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 7.5e-147 524.2 369 74.3
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 9.8e-147 523.9 354 74.0
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.3e-146 523.5 353 73.1
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 2.2e-146 522.7 361 75.1
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 1.1e-145 520.4 356 74.4
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 1.1e-145 520.4 362 71.8
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 2.4e-145 519.2 358 72.9
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 2.4e-145 519.2 360 73.9
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 3.5e-144 515.4 359 71.6
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 3.5e-144 515.4 355 72.7
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 1.0e-143 513.8 364 73.1
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 1.3e-143 513.5 361 73.4
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 2.3e-143 512.7 355 73.8
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 2.9e-143 512.3 361 71.2
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 5.0e-143 511.5 360 70.8
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 5.0e-143 511.5 379 72.0
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 5.0e-143 511.5 379 72.0
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 8.6e-143 510.8 360 71.7
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 8.6e-143 510.8 361 72.9
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 1.5e-142 510.0 354 74.0
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 2.5e-142 509.2 360 69.7
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 3.3e-142 508.8 354 74.0
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 4.3e-142 508.4 360 69.7
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 4.3e-142 508.4 356 73.3
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 5.6e-142 508.1 360 69.7
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 5.6e-142 508.1 360 69.7
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 9.5e-142 507.3 353 72.5
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 1.2e-141 506.9 372 72.6
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 2.8e-141 505.8 358 74.3
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 4.7e-141 505.0 364 69.5
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.0e-140 503.8 356 73.3
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 1.4e-140 503.4 360 68.9
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.1e-140 502.3 353 72.0
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 2.0e-139 499.6 359 69.9
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 2.6e-139 499.2 358 69.3
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.6e-139 499.2 353 70.8
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 7.5e-139 497.7 353 72.8
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.2e-138 496.1 355 69.9
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 4.9e-138 495.0 352 69.6
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 3.2e-137 492.3 331 76.1
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 4.1e-137 491.9 437 61.6
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 9.2e-137 490.7 342 73.7
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 1.2e-136 490.3 365 69.3
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.2e-136 490.3 352 71.6
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 2.7e-136 489.2 352 71.0
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 7.8e-136 487.6 380 66.8
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 2.3e-135 486.1 365 69.0
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 6.6e-135 484.6 328 74.7
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 1.1e-134 483.8 352 70.2
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 1.1e-134 483.8 358 70.4
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 1.5e-134 483.4 352 69.0
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 1.5e-134 483.4 352 69.0
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 7.3e-134 481.1 352 68.8
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.8e-133 479.2 353 68.3
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.1e-132 477.2 312 76.0
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 5.2e-132 474.9 349 68.2
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 6.8e-132 474.6 352 68.5
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 8.9e-132 474.2 361 66.2
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 2.6e-131 472.6 357 67.8
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 7.5e-131 471.1 329 75.7
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 1.3e-130 470.3 356 67.7
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 1.9e-129 466.5 353 67.4
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 1.2e-128 463.8 357 66.7
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 7.8e-128 461.1 354 66.7
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 8.6e-127 457.6 324 72.5
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 2.1e-125 453.0 357 64.1
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 4.7e-125 451.8 356 66.3
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 2.6e-123 446.0 359 64.3
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 2.6e-123 446.0 361 64.8
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.3e-122 443.7 352 63.9
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 3.7e-122 442.2 373 61.7
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 4.9e-122 441.8 376 61.4
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 4.1e-121 438.7 352 63.4
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 2.1e-120 436.4 327 69.4
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.2e-117 427.2 352 63.4
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 4.7e-117 425.2 363 59.8
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 4.0e-116 422.2 364 62.9
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 6.8e-116 421.4 286 76.9
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 6.4e-114 414.8 297 67.7
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 3.0e-111 406.0 294 74.8
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 1.9e-110 403.3 291 74.2
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.3e-106 390.6 342 58.2
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 2.1e-104 383.3 298 63.8
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 2.7e-104 382.9 322 61.2
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.0e-103 379.4 353 56.7
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 1.5e-99 367.1 353 56.4
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 2.0e-99 366.7 352 54.8
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 3.8e-98 362.5 228 78.1
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 1.1e-97 360.9 194 87.6
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 2.4e-97 359.8 194 86.1
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 6.0e-96 355.1 337 56.4
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.3e-95 353.2 194 87.1
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.9e-94 350.1 357 52.1
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 7.4e-94 348.2 347 52.4
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.6e-93 347.1 296 57.4
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 3.7e-93 345.9 309 58.6
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 1.7e-90 337.0 297 54.5
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 5.3e-68 262.3 153 80.4
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.7e-62 242.3 126 88.1
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 1.3e-61 241.1 210 59.0
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 1.6e-48 197.6 206 52.4
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.3e-47 193.7 100 89.0
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.6e-43 181.0 90 90.0
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 1.7e-42 177.6 141 71.6
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 2.9e-42 176.8 185 52.4
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 5.6e-33 146.0 237 45.1
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.6e-30 137.1 103 71.8
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 2.4e-28 130.6 82 76.8
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 4.6e-27 126.3 73 75.3
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 5.9e-27 125.9 146 50.0
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 7.8e-27 125.6 73 75.3
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.3e-26 124.0 160 51.9
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 6.4e-13 79.3 125 40.8
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 1.9e-12 77.8 43 81.4
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 4.4e-06 56.6 72 48.6


User provided reference genes

Program Settings