Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 3.4e-36 154.5 77 100.0
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 2.4e-34 148.3 77 94.8
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 2.4e-34 148.3 77 94.8
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 9.3e-34 146.4 77 93.5
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 9.3e-34 146.4 77 93.5
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 5.3e-29 130.6 70 90.0
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 6.9e-29 130.2 73 86.3
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 2.0e-28 128.6 70 88.6
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 2.6e-28 128.3 73 86.3
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 2.6e-28 128.3 73 87.7
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 4.5e-28 127.5 71 87.3
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 4.5e-28 127.5 72 84.7
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 7.6e-28 126.7 74 82.4
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 1.0e-27 126.3 64 90.6
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 1.3e-27 125.9 67 91.0
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 1.3e-27 125.9 72 87.5
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 1.7e-27 125.6 69 88.4
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 1.7e-27 125.6 63 93.7
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 2.2e-27 125.2 65 90.8
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 4.9e-27 124.0 65 90.8
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 6.5e-27 123.6 74 79.7
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 6.5e-27 123.6 72 86.1
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 6.5e-27 123.6 71 84.5
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 8.4e-27 123.2 68 86.8
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.1e-26 122.9 63 92.1
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.1e-26 122.9 67 88.1
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 1.1e-26 122.9 76 78.9
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 1.1e-26 122.9 71 83.1
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 1.4e-26 122.5 64 90.6
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 1.4e-26 122.5 71 83.1
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 1.9e-26 122.1 67 88.1
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 1.9e-26 122.1 69 85.5
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 2.5e-26 121.7 75 80.0
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 2.5e-26 121.7 64 89.1
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 4.2e-26 120.9 68 82.4
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 5.5e-26 120.6 73 84.9
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 5.5e-26 120.6 72 80.6
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 5.5e-26 120.6 61 95.1
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 9.3e-26 119.8 75 80.0
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 1.2e-25 119.4 76 78.9
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 1.2e-25 119.4 68 83.8
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 1.6e-25 119.0 65 84.6
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 2.1e-25 118.6 68 80.9
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 3.5e-25 117.9 65 90.8
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 3.5e-25 117.9 68 82.4
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 1.0e-24 116.3 58 93.1
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 1.3e-24 115.9 64 85.9
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 1.3e-24 115.9 68 80.9
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 2.3e-24 115.2 74 77.0
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 2.3e-24 115.2 67 80.6
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 3.0e-24 114.8 64 82.8
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 3.0e-24 114.8 64 82.8
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 3.0e-24 114.8 65 83.1
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 3.9e-24 114.4 71 78.9
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 3.9e-24 114.4 68 79.4
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 3.9e-24 114.4 68 79.4
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 5.1e-24 114.0 57 93.0
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 2.5e-23 111.7 70 75.7
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 3.3e-23 111.3 67 83.6
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 5.7e-23 110.5 67 80.6
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 9.6e-23 109.8 60 88.3
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 1.3e-22 109.4 75 72.0
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 2.8e-22 108.2 62 83.9
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 3.7e-22 107.8 97 60.8
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 3.7e-22 107.8 54 94.4
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 8.2e-22 106.7 61 86.9
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 1.1e-21 106.3 68 77.9
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 1.1e-21 106.3 67 77.6
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 1.4e-21 105.9 67 77.6
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.4e-21 105.9 74 70.3
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 1.4e-21 105.9 67 77.6
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 2.4e-21 105.1 66 77.3
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 2.4e-21 105.1 66 77.3
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 2.4e-21 105.1 66 77.3
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 2.4e-21 105.1 66 77.3
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 2.4e-21 105.1 53 94.3
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 3.1e-21 104.8 67 76.1
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 3.1e-21 104.8 66 77.3
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 3.1e-21 104.8 57 87.7
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 4.1e-21 104.4 74 70.3
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 4.1e-21 104.4 74 70.3
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 6.9e-21 103.6 63 79.4
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 9.0e-21 103.2 52 92.3
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 1.2e-20 102.8 67 77.6
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 1.2e-20 102.8 74 66.2
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 2.0e-20 102.1 72 70.8
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 2.0e-20 102.1 72 70.8
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 2.0e-20 102.1 72 70.8
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 1.0e-19 99.8 74 64.9
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 1.7e-19 99.0 61 80.3
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 2.2e-19 98.6 53 88.7
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 2.9e-19 98.2 100 53.0
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 5.0e-19 97.4 64 79.7
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 5.5e-18 94.0 65 73.8
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 5.5e-18 94.0 44 100.0
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 1.2e-17 92.8 49 89.8
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.2e-17 92.8 61 75.4
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 1.2e-17 92.8 66 72.7
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 2.7e-17 91.7 44 97.7
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 3.6e-17 91.3 74 60.8
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 3.6e-17 91.3 69 60.9
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 2.3e-16 88.6 44 93.2
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 2.3e-16 88.6 42 97.6
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 3.9e-16 87.8 44 90.9
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 1.5e-15 85.9 56 76.8
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 2.5e-15 85.1 44 88.6
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.1e-13 79.7 47 80.9
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 3.1e-13 78.2 47 78.7
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 1.2e-12 76.3 37 97.3
Pp3c6_10000 Physcomitrium patens HOM05D006885 ORTHO05D008606 1.7e-11 72.4 71 56.3
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.4e-10 69.3 46 69.6
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.1e-09 65.5 34 85.3
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 2.1e-09 65.5 34 85.3
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 3.6e-09 64.7 30 93.3
Mapoly0027s0032 Marchantia polymorpha HOM05D006885 ORTHO05D008606 3.3e-07 58.2 58 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2152 Anthoceros agrestis HOM05D006885 ORTHO05D008606 7.4e-07 57.0 57 56.1


User provided reference genes

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