Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 9.6e-175 616.7 303 100.0
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 2.1e-145 519.2 304 86.2
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 4.4e-127 458.4 303 76.6
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 6.9e-125 451.1 303 75.6
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.6e-121 438.7 303 74.6
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.3e-110 403.7 319 65.5
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 1.1e-109 400.6 301 67.4
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 7.7e-108 394.4 299 63.2
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 6.5e-107 391.3 303 64.7
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.5e-106 390.2 297 65.0
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.6e-105 385.6 303 63.7
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 3.6e-105 385.6 303 64.0
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 6.1e-105 384.8 302 63.6
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.4e-104 383.6 303 63.0
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 5.2e-104 381.7 305 63.3
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 2.0e-103 379.8 303 63.4
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 5.7e-103 378.3 302 64.2
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 2.8e-102 375.9 303 63.4
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 2.4e-101 372.9 290 62.8
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 5.9e-100 368.2 298 60.7
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 1.3e-99 367.1 303 61.7
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.7e-99 366.7 302 63.2
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 5.0e-99 365.2 303 63.7
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 6.5e-99 364.8 304 60.5
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 6.5e-99 364.8 302 61.3
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.1e-98 364.0 291 62.9
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.5e-98 363.6 303 62.0
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 2.5e-98 362.8 295 61.4
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 7.2e-98 361.3 302 59.3
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 9.5e-98 360.9 304 63.2
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 8.0e-97 357.8 292 61.6
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.2e-95 354.0 293 62.5
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.2e-95 354.0 293 61.4
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.2e-95 354.0 302 59.9
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 3.4e-95 352.4 304 59.2
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 5.7e-95 351.7 303 62.0
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 9.8e-95 350.9 293 61.4
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.7e-94 350.1 272 64.7
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 1.7e-94 350.1 291 60.8
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 2.2e-94 349.7 291 61.2
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.8e-94 349.4 291 60.8
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 2.8e-94 349.4 296 60.8
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 4.9e-94 348.6 291 60.1
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 4.9e-94 348.6 305 60.0
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 4.9e-94 348.6 306 60.1
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.4e-93 347.1 291 59.8
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 3.1e-93 345.9 291 60.8
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 3.1e-93 345.9 292 59.9
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 5.4e-93 345.1 302 58.9
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 7.0e-93 344.7 303 59.1
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.6e-92 343.6 300 58.7
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 3.5e-92 342.4 304 57.2
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 4.5e-92 342.0 289 59.5
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 1.0e-91 340.9 302 59.3
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.7e-91 340.1 291 59.5
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 1.7e-91 340.1 291 57.4
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 2.3e-91 339.7 292 59.6
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 3.8e-91 339.0 294 58.8
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 3.3e-90 335.9 309 57.0
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 4.3e-90 335.5 296 58.8
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 7.3e-90 334.7 306 58.2
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.6e-89 333.6 319 56.4
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 4.7e-89 332.0 300 57.7
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.8e-88 330.1 291 55.3
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.8e-88 330.1 296 57.4
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 2.3e-88 329.7 313 56.2
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.2e-87 327.4 307 56.7
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 2.6e-87 326.2 307 56.7
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 2.9e-86 322.8 292 56.8
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 3.5e-84 315.8 269 61.0
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 1.0e-83 314.3 296 56.1
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.0e-83 314.3 277 58.8
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.3e-83 313.9 294 56.8
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 3.0e-83 312.8 289 55.4
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 6.6e-83 311.6 217 65.9
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 1.1e-82 310.8 295 55.6
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.5e-82 310.5 294 55.1
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 3.3e-82 309.3 282 58.5
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 8.0e-81 304.7 283 58.0
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.4e-80 303.9 279 54.5
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 4.4e-79 298.9 322 53.4
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 9.8e-79 297.7 294 54.4
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 9.2e-77 291.2 293 53.2
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.1e-74 284.3 302 49.7
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.5e-74 283.9 250 60.8
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 5.2e-72 275.4 174 75.9
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.6e-71 273.1 339 50.1
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.1e-69 267.7 353 43.6
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 3.0e-67 259.6 283 49.5
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 8.6e-67 258.1 284 52.1
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.5e-66 257.3 290 51.0
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.5e-66 256.5 333 47.7
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.8e-64 250.4 339 47.8
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 4.0e-64 249.2 299 47.8
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 6.8e-64 248.4 173 68.8
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 5.8e-63 245.4 299 46.8
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.7e-62 243.8 175 65.7
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 2.7e-60 236.5 311 44.1
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.7e-59 233.8 301 46.5
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.1e-56 224.6 293 42.0
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 5.8e-55 218.8 151 71.5
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.7e-51 207.2 164 61.0
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 1.1e-50 204.5 275 45.1
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.5e-50 204.1 286 42.0
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 7.3e-50 201.8 288 43.4
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.1e-49 200.3 132 72.7
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 8.1e-49 198.4 118 78.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 6.9e-48 195.3 284 41.2
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 7.6e-47 191.8 302 41.1
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.7e-46 190.7 300 38.7
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 1.1e-45 188.0 186 54.3
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 1.6e-44 184.1 299 37.8
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.9e-43 179.5 221 47.5
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 5.1e-43 179.1 195 49.2
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 8.7e-43 178.3 98 84.7
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.3e-41 174.5 306 38.6
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.7e-41 172.9 103 76.7
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 3.7e-41 172.9 324 37.0
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 4.2e-37 159.5 291 39.2
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 5.5e-37 159.1 96 77.1
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.2e-36 157.9 123 61.0
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 7.9e-36 155.2 149 52.3
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 1.0e-35 154.8 206 43.7
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 8.7e-35 151.8 124 63.7
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 4.3e-34 149.4 166 48.2
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.0e-31 140.6 209 39.7
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.4e-26 122.1 100 59.0
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.0e-23 114.0 142 42.3
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.0e-23 114.0 142 43.7
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 5.0e-22 109.4 208 35.1
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 3.3e-18 96.7 55 78.2
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.3e-17 94.7 50 88.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.1e-12 75.9 118 39.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 6.7e-11 72.4 50 66.0
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.8e-08 64.3 67 50.7
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 3.4e-07 60.1 101 37.6
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 4.5e-07 59.7 109 35.8
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 6.5e-06 55.8 36 69.4


User provided reference genes

Program Settings