Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0428231 Rosa chinensis HOM05D002759 ORTHO05D020730 1.5e-92 342.8 166 100.0
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 2.7e-22 109.4 139 41.7
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 2.7e-22 109.4 139 40.3
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 7.9e-22 107.8 139 41.7
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 1.0e-21 107.5 124 46.8
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 3.0e-21 105.9 138 43.5
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 8.7e-21 104.4 138 43.5
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 7.4e-20 101.3 139 38.8
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 7.4e-20 101.3 136 39.7
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 9.7e-20 100.9 143 39.9
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 2.2e-19 99.8 137 40.1
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 2.2e-19 99.8 125 44.0
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 2.2e-19 99.8 125 44.0
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.8e-19 99.4 139 38.1
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 2.8e-19 99.4 139 40.3
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 3.7e-19 99.0 159 36.5
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 3.7e-19 99.0 159 36.5
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 3.7e-19 99.0 135 42.2
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 3.7e-19 99.0 125 43.2
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 6.3e-19 98.2 121 40.5
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 8.2e-19 97.8 149 38.9
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 8.2e-19 97.8 138 39.1
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 1.1e-18 97.4 159 36.5
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 1.1e-18 97.4 132 43.2
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 1.4e-18 97.1 143 39.2
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 1.4e-18 97.1 176 35.2
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 1.4e-18 97.1 139 38.8
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 1.8e-18 96.7 159 36.5
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 3.1e-18 95.9 126 41.3
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 4.1e-18 95.5 112 45.5
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 6.9e-18 94.7 139 39.6
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 6.9e-18 94.7 142 37.3
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 9.0e-18 94.4 136 39.7
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 9.0e-18 94.4 139 40.3
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 9.0e-18 94.4 177 35.6
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 1.2e-17 94.0 136 39.0
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.2e-17 94.0 136 39.0
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.2e-17 94.0 136 39.0
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 1.5e-17 93.6 138 35.5
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 1.5e-17 93.6 138 39.1
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.5e-17 93.6 139 38.1
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 2.0e-17 93.2 130 40.0
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 2.6e-17 92.8 178 33.1
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 2.6e-17 92.8 126 40.5
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 3.4e-17 92.4 134 41.0
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 3.4e-17 92.4 139 41.7
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 5.9e-17 91.7 182 32.4
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 7.7e-17 91.3 149 36.2
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.0e-16 90.9 136 38.2
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.0e-16 90.9 146 36.3
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 1.0e-16 90.9 139 40.3
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.7e-16 90.1 151 35.8
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 3.8e-16 89.0 135 37.8
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 3.8e-16 89.0 122 41.0
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 5.0e-16 88.6 131 39.7
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 5.0e-16 88.6 131 39.7
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 5.0e-16 88.6 148 35.8
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 6.5e-16 88.2 139 37.4
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 6.5e-16 88.2 139 37.4
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 6.5e-16 88.2 179 34.1
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 6.5e-16 88.2 138 35.5
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 1.4e-15 87.0 150 34.0
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 1.4e-15 87.0 145 35.2
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 1.9e-15 86.7 119 40.3
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 2.5e-15 86.3 132 37.1
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 3.2e-15 85.9 132 36.4
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 4.2e-15 85.5 137 38.0
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 4.2e-15 85.5 168 35.7
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 5.5e-15 85.1 138 34.1
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 5.5e-15 85.1 138 34.1
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.5e-15 85.1 124 38.7
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 5.5e-15 85.1 132 35.6
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 5.5e-15 85.1 135 36.3
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 7.2e-15 84.7 137 37.2
Gohir.A01G176601 Gossypium hirsutum HOM05D002759 ORTHO05D003290 7.2e-15 84.7 133 39.1
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 9.4e-15 84.3 129 38.8
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 9.4e-15 84.3 134 36.6
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.6e-14 83.6 131 37.4
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 2.1e-14 83.2 134 34.3
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 2.7e-14 82.8 133 37.6
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 3.6e-14 82.4 138 36.2
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 3.6e-14 82.4 138 32.6
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 4.6e-14 82.0 112 39.3
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 7.9e-14 81.3 101 41.6
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 1.4e-13 80.5 110 40.9
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.4e-13 80.5 135 37.8
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.4e-13 80.5 133 34.6
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 1.4e-13 80.5 143 37.8
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 1.4e-13 80.5 126 34.9
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.8e-13 80.1 135 37.0
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 3.9e-13 79.0 119 39.5
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 8.8e-13 77.8 110 38.2
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 8.8e-13 77.8 110 38.2
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 2.5e-12 76.3 138 34.8
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 4.3e-12 75.5 131 35.1
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 5.7e-12 75.1 96 40.6
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 5.7e-12 75.1 118 36.4
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 5.7e-12 75.1 155 30.3
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 1.3e-11 73.9 131 34.4
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 1.7e-11 73.6 130 36.9
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 2.4e-10 69.7 131 35.1
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 5.3e-10 68.6 80 41.2
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 5.3e-10 68.6 118 38.1
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 6.9e-10 68.2 93 38.7
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 1.5e-09 67.0 120 35.0
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 2.6e-09 66.2 133 29.3
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.6e-09 66.2 133 33.1
FAN01G1856 Fragaria x ananassa HOM05D002759 ORTHO05D020730 2.6e-09 66.2 97 38.1
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 5.9e-09 65.1 132 32.6
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.4e-07 60.5 131 29.8
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 7.2e-07 58.2 48 54.2
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.1e-06 56.6 60 43.3
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 7.9e-06 54.7 103 34.0


User provided reference genes

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