Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 1.8e-116 422.5 205 100.0
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.5e-110 402.9 205 95.1
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 1.1e-108 396.7 205 93.7
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 2.0e-99 365.9 205 86.3
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.4e-97 359.8 206 85.9
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.3e-95 352.4 202 84.2
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 5.1e-95 351.3 204 82.4
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 2.1e-93 345.9 202 85.1
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 1.8e-92 342.8 197 82.7
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 3.1e-92 342.0 202 81.2
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 3.1e-92 342.0 202 81.7
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 6.9e-92 340.9 199 81.9
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 8.9e-92 340.5 202 81.2
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 8.9e-92 340.5 202 81.2
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 1.5e-91 339.7 198 82.3
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 1.5e-91 339.7 204 80.4
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 2.6e-91 339.0 208 80.3
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 2.6e-91 339.0 199 81.9
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 3.4e-91 338.6 200 81.0
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 4.4e-91 338.2 202 80.7
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 9.9e-91 337.0 202 80.7
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 9.9e-91 337.0 201 80.6
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.3e-90 336.7 200 81.5
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.3e-90 336.7 200 81.5
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.7e-90 336.3 200 81.0
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 1.7e-90 336.3 199 81.4
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 2.9e-90 335.5 202 80.7
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 3.8e-90 335.1 205 79.5
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 4.9e-90 334.7 203 78.8
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 6.4e-90 334.3 205 80.5
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 6.4e-90 334.3 205 79.5
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.1e-89 333.6 207 78.3
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 1.1e-89 333.6 208 78.4
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 3.2e-89 332.0 197 80.7
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 3.2e-89 332.0 197 80.7
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 3.2e-89 332.0 203 77.8
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 3.2e-89 332.0 202 80.2
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 4.2e-89 331.6 208 77.9
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 4.2e-89 331.6 202 80.2
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 7.1e-89 330.9 202 79.7
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 7.1e-89 330.9 201 80.6
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 7.1e-89 330.9 208 76.4
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 9.3e-89 330.5 203 77.8
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 9.3e-89 330.5 200 79.0
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.2e-88 330.1 205 78.0
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.1e-88 329.3 202 77.2
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 2.1e-88 329.3 208 77.4
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 2.1e-88 329.3 202 78.2
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 2.7e-88 328.9 204 77.5
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 2.7e-88 328.9 202 78.2
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 3.5e-88 328.6 202 77.2
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 4.6e-88 328.2 201 76.6
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 6.0e-88 327.8 200 77.5
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.3e-87 326.6 204 78.9
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.7e-87 326.2 205 79.0
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 2.3e-87 325.9 203 77.3
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 2.3e-87 325.9 198 79.8
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 3.0e-87 325.5 204 77.9
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 5.1e-87 324.7 202 78.7
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 5.1e-87 324.7 203 79.3
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 6.6e-87 324.3 200 78.5
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 6.6e-87 324.3 207 75.8
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 6.6e-87 324.3 203 77.3
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 6.6e-87 324.3 200 79.0
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 8.7e-87 323.9 198 79.3
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 1.1e-86 323.6 202 78.2
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.1e-86 323.6 200 78.0
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.5e-86 323.2 200 77.5
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.5e-86 323.2 210 75.7
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 1.5e-86 323.2 198 79.3
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 4.3e-86 321.6 206 76.2
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 9.6e-86 320.5 205 76.1
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.8e-85 318.9 203 77.8
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 3.6e-85 318.5 204 76.0
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 4.8e-85 318.2 203 78.8
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 4.8e-85 318.2 203 78.8
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 4.8e-85 318.2 201 76.6
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 8.1e-85 317.4 198 78.3
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.1e-84 317.0 214 75.2
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 1.4e-84 316.6 201 77.1
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 1.8e-84 316.2 206 75.2
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 3.1e-84 315.5 197 77.2
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 5.3e-84 314.7 204 75.5
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 9.0e-84 313.9 204 74.5
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 2.0e-83 312.8 200 75.5
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 2.0e-83 312.8 201 76.6
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 4.5e-83 311.6 203 74.4
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 5.8e-83 311.2 205 75.1
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 7.6e-83 310.8 223 69.5
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 2.2e-82 309.3 194 75.8
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.2e-82 309.3 202 73.8
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 2.2e-82 309.3 205 74.6
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 3.8e-82 308.5 201 74.6
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 6.4e-82 307.8 202 74.3
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 1.2e-80 303.5 202 74.3
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.5e-78 295.8 202 72.8
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.3e-78 295.4 202 72.8
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 3.3e-78 295.4 202 72.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.1e-76 290.4 183 77.0
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 7.6e-75 284.3 173 79.2
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 1.6e-72 276.6 197 68.5
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.7e-72 275.8 200 71.0
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 6.0e-72 274.6 198 69.2
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 3.1e-68 262.3 204 61.8
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 2.9e-66 255.8 165 73.9
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 1.1e-65 253.8 166 75.9
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 1.0e-63 247.3 205 56.6
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.9e-62 243.0 159 69.8
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 5.7e-62 241.5 203 60.1
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.3e-61 240.4 203 61.6
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.8e-60 236.5 204 57.4
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.8e-60 236.5 203 60.6
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 2.6e-59 232.6 143 78.3
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 2.9e-58 229.2 198 56.6
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.2e-56 223.8 196 57.1
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 4.3e-54 215.3 147 73.5
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.4e-52 209.5 132 78.0
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 3.9e-47 192.2 124 71.8
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 2.4e-44 183.0 147 66.0
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 6.9e-44 181.4 119 73.9
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 9.1e-44 181.0 119 73.9
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.2e-43 180.6 147 65.3
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 7.7e-43 177.9 162 58.0
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 3.2e-41 172.6 97 79.4
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 1.8e-36 156.8 161 49.7
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 1.4e-31 140.6 191 40.3
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.8e-31 140.2 93 76.3
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 1.6e-27 127.1 208 42.3
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 6.1e-24 115.2 90 64.4
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.0e-22 110.2 102 55.9
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 5.7e-22 108.6 75 68.0
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 3.7e-21 105.9 60 75.0
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.0e-18 97.8 75 66.7
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 1.1e-12 77.8 59 67.8
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 7.8e-11 71.6 37 89.2
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 9.5e-09 64.7 41 75.6
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.4e-07 60.8 35 82.9
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 1.2e-06 57.8 36 77.8


User provided reference genes

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