Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 4.3e-124 448.0 221 100.0
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 8.5e-72 274.2 222 69.8
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.9e-71 273.1 220 70.5
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.5e-71 271.6 220 70.0
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.7e-70 269.2 220 69.5
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 6.1e-70 268.1 220 69.5
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-69 266.9 220 69.5
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 6.7e-69 264.6 220 66.4
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-68 263.5 220 66.4
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-68 263.5 220 66.4
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 2.0e-68 263.1 221 65.6
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 2.6e-68 262.7 221 65.6
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 3.3e-68 262.3 220 65.5
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 4.4e-68 261.9 221 65.6
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 4.4e-68 261.9 220 65.5
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 7.4e-68 261.2 220 65.5
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 7.4e-68 261.2 220 65.5
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 1.3e-67 260.4 220 65.9
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.3e-67 260.4 220 65.9
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.3e-67 260.4 220 65.5
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 1.7e-67 260.0 220 65.9
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 2.2e-67 259.6 220 65.5
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 4.8e-67 258.5 221 65.2
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 4.8e-67 258.5 221 65.2
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 6.3e-67 258.1 221 65.6
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 6.3e-67 258.1 221 65.6
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.1e-66 257.3 221 66.1
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 1.4e-66 256.9 220 65.5
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 1.4e-66 256.9 221 63.3
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 1.4e-66 256.9 220 64.1
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 2.4e-66 256.1 221 66.5
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 2.4e-66 256.1 221 65.6
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 3.1e-66 255.8 221 67.0
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 5.3e-66 255.0 221 63.8
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 7.0e-66 254.6 221 64.3
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.2e-65 253.8 220 65.9
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 2.6e-65 252.7 221 64.3
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 2.6e-65 252.7 221 64.3
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.5e-65 252.3 220 64.1
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.5e-65 252.3 220 64.1
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 4.5e-65 251.9 220 64.1
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 4.5e-65 251.9 220 64.5
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.9e-65 251.5 259 59.5
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.3e-64 250.4 221 63.8
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.7e-64 250.0 220 65.5
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 2.2e-64 249.6 220 64.5
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 2.9e-64 249.2 221 63.8
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 6.5e-64 248.1 220 63.6
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.5e-64 248.1 221 63.8
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 8.5e-64 247.7 220 63.6
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 8.5e-64 247.7 220 63.6
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 8.5e-64 247.7 220 63.6
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 8.5e-64 247.7 220 63.6
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 8.5e-64 247.7 220 63.6
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 8.5e-64 247.7 220 63.6
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 8.5e-64 247.7 220 63.6
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 8.5e-64 247.7 220 63.6
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 8.5e-64 247.7 220 63.6
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-63 247.3 221 63.3
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-63 247.3 221 63.3
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.1e-63 247.3 221 63.3
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.1e-63 247.3 224 64.3
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 1.9e-63 246.5 220 63.6
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.9e-63 246.5 220 63.2
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.9e-63 246.5 220 63.2
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.5e-63 246.1 221 63.3
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.5e-63 246.1 221 63.3
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.2e-63 245.7 221 62.4
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 3.2e-63 245.7 220 63.2
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.2e-63 245.7 221 62.4
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 4.2e-63 245.4 221 62.0
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.2e-63 245.4 220 63.2
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 5.5e-63 245.0 220 62.7
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 5.5e-63 245.0 220 63.2
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.2e-63 244.6 221 62.0
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 7.2e-63 244.6 220 63.6
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 9.4e-63 244.2 220 63.2
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.2e-62 243.8 220 63.2
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.2e-62 243.8 220 63.6
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-62 243.4 221 62.9
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 2.1e-62 243.0 220 62.7
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 2.1e-62 243.0 220 62.7
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 4.7e-62 241.9 220 62.3
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 4.7e-62 241.9 220 62.7
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 4.7e-62 241.9 221 61.1
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 6.1e-62 241.5 220 63.2
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 8.0e-62 241.1 220 61.8
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 8.0e-62 241.1 221 62.4
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 8.0e-62 241.1 221 62.4
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 8.0e-62 241.1 220 62.7
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.4e-61 240.4 221 60.2
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.8e-61 240.0 221 60.2
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.8e-61 240.0 221 62.4
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 2.3e-61 239.6 220 61.4
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 3.0e-61 239.2 220 62.3
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 4.0e-61 238.8 220 60.5
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 4.0e-61 238.8 220 60.9
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.5e-60 236.9 220 60.9
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.5e-60 236.9 220 61.4
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.5e-60 236.9 221 60.2
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.5e-60 236.9 220 61.4
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.5e-60 236.9 220 61.4
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.5e-60 236.9 220 61.4
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.0e-60 236.5 221 61.1
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.0e-60 236.5 221 61.1
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.6e-60 236.1 220 61.8
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 3.3e-60 235.7 221 60.6
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.3e-60 235.7 221 59.7
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.3e-60 235.7 220 60.9
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 5.7e-60 235.0 220 60.9
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 5.7e-60 235.0 220 60.9
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 7.5e-60 234.6 220 61.8
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 1.7e-59 233.4 220 60.9
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.2e-59 233.0 220 61.4
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 3.7e-59 232.3 220 60.9
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.7e-59 232.3 221 59.3
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 3.7e-59 232.3 220 60.9
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 4.8e-59 231.9 220 60.5
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 6.3e-59 231.5 221 59.3
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 6.3e-59 231.5 220 60.0
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 6.3e-59 231.5 240 57.9
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 8.2e-59 231.1 220 60.5
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 8.2e-59 231.1 207 63.3
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 8.2e-59 231.1 221 60.2
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 8.2e-59 231.1 220 60.9
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 8.2e-59 231.1 218 60.6
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.8e-58 229.9 221 59.3
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.4e-58 229.6 220 59.1
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 2.4e-58 229.6 221 58.8
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 4.1e-58 228.8 221 59.3
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.1e-58 228.8 229 59.0
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 4.1e-58 228.8 221 60.2
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 5.3e-58 228.4 220 60.0
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 7.0e-58 228.0 207 62.8
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 2.0e-57 226.5 220 60.5
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.5e-57 225.7 220 60.0
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 4.5e-57 225.3 220 59.1
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.0e-56 224.2 221 59.7
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 6.5e-56 221.5 221 58.8
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 6.5e-56 221.5 220 57.3
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.5e-55 220.3 221 57.9
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 1.6e-54 216.9 221 56.1
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 6.1e-54 214.9 214 57.5
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 1.8e-53 213.4 206 58.7
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 8.8e-53 211.1 220 55.0
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 3.4e-52 209.1 204 59.8
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.8e-50 203.4 191 61.3
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 9.1e-50 201.1 216 56.9
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.7e-48 196.8 220 52.7
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 2.9e-48 196.1 217 52.5
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.2e-42 174.5 125 74.4
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-41 174.1 168 58.3
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 2.6e-36 156.4 206 47.6
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 4.1e-34 149.1 156 55.1
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 3.9e-32 142.5 130 59.2
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 5.6e-31 138.7 125 65.6
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.6e-31 138.7 87 74.7
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.0e-30 134.8 222 42.3
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 4.4e-28 129.0 219 40.6
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.1e-26 124.4 206 44.2
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 3.2e-26 122.9 103 64.1
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 4.7e-22 109.0 78 75.6
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 8.1e-22 108.2 228 37.3
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.2e-20 104.4 142 43.7
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.2e-20 104.4 142 43.7
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.9e-18 97.1 85 61.2
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 3.0e-16 89.7 206 37.9
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 1.9e-15 87.0 92 54.3
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.2e-14 84.3 68 67.6
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 2.1e-14 83.6 66 65.2
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 1.8e-13 80.5 59 71.2
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 1.8e-13 80.5 59 71.2
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 7.6e-12 75.1 51 72.5
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 9.9e-12 74.7 50 78.0
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-09 67.8 49 73.5
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 6.0e-09 65.5 49 73.5
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 6.2e-06 55.5 48 62.5


User provided reference genes

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