Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 9.9e-179 630.2 359 100.0
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.4e-135 486.9 359 81.3
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 9.1e-132 474.2 359 79.4
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 7.2e-129 464.5 359 78.3
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 1.6e-99 367.1 386 65.5
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 1.2e-94 350.9 386 61.4
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 9.8e-86 321.2 386 58.8
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 7.3e-65 251.9 400 45.0
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.3e-61 241.1 396 44.9
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 3.8e-61 239.6 388 43.3
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 4.3e-57 226.1 378 46.6
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 4.0e-55 219.5 384 46.1
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 3.4e-54 216.5 325 44.0
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 7.6e-54 215.3 382 45.3
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 2.9e-53 213.4 398 45.5
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 3.8e-53 213.0 392 45.7
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 2.7e-51 206.8 377 44.6
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 2.7e-51 206.8 372 41.1
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 3.9e-50 203.0 392 40.8
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 3.3e-49 199.9 386 42.0
FAN07G1029 Fragaria x ananassa HOM05D005773 ORTHO05D006930 9.6e-49 198.4 149 73.2
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 1.3e-48 198.0 384 43.8
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 6.9e-47 192.2 366 42.9
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 1.2e-46 191.4 364 39.8
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 2.0e-46 190.7 374 45.2
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 3.4e-46 189.9 386 42.7
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 7.6e-46 188.7 418 40.2
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 7.6e-46 188.7 379 43.8
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 7.6e-46 188.7 379 43.8
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 4.9e-45 186.0 366 45.1
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 1.4e-44 184.5 386 43.0
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 3.2e-44 183.3 310 41.9
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 4.2e-44 183.0 388 39.7
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 5.5e-44 182.6 387 41.9
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 7.1e-44 182.2 388 39.9
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 7.1e-44 182.2 367 44.7
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 1.2e-43 181.4 363 43.5
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 2.1e-43 180.6 420 38.6
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 3.9e-42 176.4 369 43.1
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 3.9e-42 176.4 377 43.0
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 6.7e-42 175.6 339 38.9
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 6.7e-42 175.6 274 44.2
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 3.3e-41 173.3 366 44.3
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 7.4e-41 172.2 369 41.5
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 7.4e-41 172.2 425 38.4
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 7.4e-41 172.2 408 34.6
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 2.8e-40 170.2 415 39.5
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 6.2e-40 169.1 395 42.0
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 8.2e-40 168.7 343 40.5
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 8.2e-40 168.7 367 43.6
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 8.2e-40 168.7 386 43.0
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 8.2e-40 168.7 379 40.9
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 8.2e-40 168.7 364 44.0
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 1.1e-39 168.3 366 46.2
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 1.1e-39 168.3 383 41.0
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 1.4e-39 167.9 376 41.8
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.4e-39 167.9 390 38.5
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 3.1e-39 166.8 379 38.3
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 4.0e-39 166.4 373 41.3
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 5.3e-39 166.0 387 40.6
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 1.2e-38 164.9 376 42.8
FAN12G0946 Fragaria x ananassa HOM05D005773 ORTHO05D046089 5.8e-38 162.5 157 65.0
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 5.8e-38 162.5 385 36.6
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 1.0e-37 161.8 371 43.1
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 1.7e-37 161.0 382 38.7
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 1.7e-37 161.0 369 37.7
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.7e-37 161.0 356 41.0
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 5.0e-37 159.5 391 35.5
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 5.0e-37 159.5 356 42.1
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 5.0e-37 159.5 380 40.8
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 6.5e-37 159.1 420 40.0
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 6.5e-37 159.1 419 38.9
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.4e-36 157.9 355 40.3
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 1.4e-36 157.9 417 38.8
FvH4_4g21660 Fragaria vesca HOM05D005773 ORTHO05D046089 1.9e-36 157.5 157 64.3
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 5.5e-36 156.0 381 37.0
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 1.2e-35 154.8 364 42.3
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 6.1e-35 152.5 364 42.3
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 1.8e-34 151.0 258 42.6
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 5.1e-34 149.4 363 35.8
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 5.1e-34 149.4 362 42.0
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 1.5e-33 147.9 365 42.5
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 3.3e-33 146.7 370 33.5
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 7.4e-33 145.6 372 40.1
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 9.7e-33 145.2 340 37.6
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 1.6e-32 144.4 361 36.6
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 2.8e-32 143.7 340 37.1
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 3.7e-32 143.3 275 48.7
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 3.1e-31 140.2 353 34.0
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 5.3e-31 139.4 373 40.5
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 4.5e-30 136.3 367 39.5
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 4.5e-30 136.3 370 40.8
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 1.0e-29 135.2 320 41.2
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 2.2e-29 134.0 378 38.6
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 8.5e-29 132.1 386 41.2
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 3.2e-28 130.2 365 38.9
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 4.2e-28 129.8 372 37.1
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 9.4e-28 128.6 373 37.8
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 7.9e-27 125.6 362 36.7
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 7.9e-27 125.6 354 37.0
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.0e-26 125.2 370 35.9
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 6.7e-26 122.5 383 39.4
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 3.3e-25 120.2 371 33.4
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 4.3e-25 119.8 372 39.0
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 1.3e-24 118.2 299 35.5
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 1.8e-23 114.4 323 38.4
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 3.1e-23 113.6 445 31.9
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 1.2e-22 111.7 292 42.1
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.5e-22 111.3 127 47.2
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 2.0e-22 110.9 230 37.4
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 7.7e-22 109.0 107 54.2
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 9.4e-20 102.1 211 37.4
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.6e-19 101.3 321 34.6
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 2.1e-19 100.9 180 39.4
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 3.6e-19 100.1 364 32.7
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 3.0e-18 97.1 352 36.9
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 2.0e-14 84.3 336 33.9
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 4.5e-14 83.2 331 34.1
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 5.0e-13 79.7 83 54.2
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 8.5e-13 79.0 398 26.6
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 2.7e-11 73.9 48 66.7
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 2.6e-09 67.4 145 47.6
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 1.1e-07 62.0 44 61.4
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 2.0e-06 57.8 103 37.9
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 5.9e-06 56.2 110 36.4
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 5.9e-06 56.2 79 40.5


User provided reference genes

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