Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 4.8e-45 184.1 91 100.0
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 1.7e-42 175.6 91 95.6
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 1.7e-42 175.6 91 95.6
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 4.9e-42 174.1 90 91.1
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 5.4e-41 170.6 90 90.0
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 7.1e-41 170.2 89 89.9
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 9.3e-41 169.9 90 88.9
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 9.3e-41 169.9 90 88.9
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 9.3e-41 169.9 90 87.8
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 1.6e-40 169.1 90 88.9
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 1.6e-40 169.1 90 88.9
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 1.6e-40 169.1 90 88.9
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 2.1e-40 168.7 90 87.8
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 2.1e-40 168.7 90 85.6
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 2.7e-40 168.3 90 88.9
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 3.5e-40 167.9 90 85.6
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 3.5e-40 167.9 91 90.1
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 6.0e-40 167.2 90 86.7
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 6.0e-40 167.2 90 86.7
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 6.0e-40 167.2 90 86.7
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 7.9e-40 166.8 90 85.6
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 1.0e-39 166.4 90 87.8
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 1.3e-39 166.0 90 85.6
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 1.8e-39 165.6 90 86.7
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 2.3e-39 165.2 90 87.8
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 2.3e-39 165.2 90 86.7
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 3.0e-39 164.9 90 87.8
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 3.0e-39 164.9 91 85.7
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 5.1e-39 164.1 90 84.4
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 6.7e-39 163.7 90 86.7
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 6.7e-39 163.7 90 84.4
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 6.7e-39 163.7 87 87.4
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 8.7e-39 163.3 88 88.6
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 1.1e-38 162.9 89 84.3
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.1e-38 162.9 90 84.4
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 1.1e-38 162.9 90 86.7
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 1.5e-38 162.5 90 84.4
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 1.5e-38 162.5 90 85.6
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 1.9e-38 162.2 90 85.6
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 1.9e-38 162.2 88 85.2
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 1.9e-38 162.2 90 84.4
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 2.5e-38 161.8 90 85.6
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 2.5e-38 161.8 90 85.6
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 2.5e-38 161.8 88 85.2
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 3.3e-38 161.4 91 83.5
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 7.4e-38 160.2 89 85.4
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 7.4e-38 160.2 89 85.4
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 1.3e-37 159.5 89 84.3
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.3e-37 159.5 90 83.3
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.3e-37 159.5 90 83.3
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 1.3e-37 159.5 90 83.3
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 1.3e-37 159.5 89 83.1
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 1.6e-37 159.1 90 84.4
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 1.6e-37 159.1 90 83.3
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 2.8e-37 158.3 88 84.1
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 2.8e-37 158.3 90 81.1
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 2.8e-37 158.3 90 80.0
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 3.7e-37 157.9 88 83.0
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 4.8e-37 157.5 90 84.4
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 6.2e-37 157.1 89 83.1
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 6.2e-37 157.1 90 82.2
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 8.1e-37 156.8 89 84.3
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 1.8e-36 155.6 90 80.0
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 1.8e-36 155.6 88 80.7
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 1.8e-36 155.6 88 81.8
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 4.0e-36 154.5 90 80.0
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 1.2e-35 152.9 85 82.4
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 2.0e-35 152.1 90 77.8
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 2.0e-35 152.1 90 77.8
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 3.4e-35 151.4 89 76.4
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 4.5e-35 151.0 89 76.4
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 9.9e-35 149.8 88 80.7
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 1.3e-34 149.4 89 77.5
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 3.8e-34 147.9 89 77.5
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 3.8e-34 147.9 89 77.5
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 3.8e-34 147.9 89 77.5
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 3.8e-34 147.9 84 79.8
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 8.4e-34 146.7 89 76.4
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 8.4e-34 146.7 89 76.4
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 8.4e-34 146.7 89 76.4
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 8.4e-34 146.7 89 76.4
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 8.4e-34 146.7 89 76.4
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.1e-33 146.4 84 78.6
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 1.1e-33 146.4 133 60.2
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 1.9e-33 145.6 89 75.3
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 1.9e-33 145.6 90 78.9
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 3.2e-33 144.8 89 75.3
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 3.2e-33 144.8 89 75.3
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 3.2e-33 144.8 89 75.3
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 3.2e-33 144.8 89 75.3
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 4.2e-33 144.4 89 75.3
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 4.2e-33 144.4 89 75.3
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 4.2e-33 144.4 89 75.3
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 1.6e-32 142.5 89 75.3
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 1.3e-31 139.4 86 75.6
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 1.3e-31 139.4 86 75.6
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 1.3e-31 139.4 88 72.7
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 2.3e-31 138.7 90 76.7
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 2.3e-31 138.7 88 75.0
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 2.3e-31 138.7 88 75.0
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 5.1e-31 137.5 82 79.3
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 1.5e-30 136.0 119 58.8
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 1.9e-30 135.6 142 54.2
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.1e-28 129.8 120 55.8
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 9.0e-28 126.7 66 87.9
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 1.7e-26 122.5 84 70.2
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 2.2e-26 122.1 90 68.9
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 2.9e-26 121.7 66 84.8
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 1.4e-25 119.4 118 60.2
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 1.9e-25 119.0 66 83.3
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 1.2e-24 116.3 66 81.8
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 1.6e-24 115.9 65 81.5
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 1.6e-21 105.9 60 78.3
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 3.1e-20 101.7 95 55.8
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 5.0e-18 94.4 58 72.4
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 3.2e-17 91.7 89 55.1
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 5.5e-17 90.9 91 54.9
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 1.9e-14 82.4 71 53.5
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 2.5e-14 82.0 84 46.4
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 2.5e-14 82.0 105 46.7
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 3.3e-14 81.6 66 66.7
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 4.3e-14 81.3 83 41.0
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 7.4e-14 80.5 56 73.2
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 1.3e-13 79.7 60 68.3
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 1.8e-12 75.9 60 65.0
Cre14.g626250 Chlamydomonas reinhardtii HOM05D006364 ORTHO05D007968 5.5e-09 64.3 67 47.8
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.6e-08 62.8 52 53.8
Ciclev10027020m.g Citrus clementina HOM05D006364 ORTHO05D007968 1.8e-07 59.3 135 40.0
MCO05G593 Micromonas commoda HOM05D006364 ORTHO05D007968 4.4e-06 54.7 71 36.6


User provided reference genes

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