Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0426031 Rosa chinensis HOM05D007409 ORTHO05D031595 4.5e-67 258.1 158 100.0
RcHm_v2.0_Chr4g0425991 Rosa chinensis HOM05D007409 ORTHO05D009264 8.0e-24 114.4 78 73.1
Prupe.1G113200 Prunus persica HOM05D007409 ORTHO05D009264 8.3e-21 104.4 76 69.7
FvH4_4g20630 Fragaria vesca HOM05D007409 ORTHO05D009264 1.9e-20 103.2 78 64.1
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 3.0e-18 95.9 161 32.9
MD13G1149200 Malus domestica HOM05D007409 ORTHO05D009264 3.1e-15 85.9 73 56.2
BcaB05g22985 Brassica carinata HOM05D007409 ORTHO05D009264 4.4e-14 82.0 142 30.3
Thhalv10010184m.g Eutrema salsugineum HOM05D007409 ORTHO05D009264 7.5e-14 81.3 139 30.9
Glyma.07G160400 Glycine max HOM05D007409 ORTHO05D009264 7.5e-14 81.3 74 52.7
Atru.chr4.3064 Acer truncatum HOM05D007409 ORTHO05D009264 1.3e-13 80.5 71 49.3
AT3G48810 Arabidopsis thaliana HOM05D007409 ORTHO05D009264 2.2e-13 79.7 142 30.3
C01p31450 Brassica napus HOM05D007409 ORTHO05D009264 2.9e-13 79.3 143 30.1
BcaC09g49905 Brassica carinata HOM05D007409 ORTHO05D009264 3.7e-13 79.0 143 30.1
BolC1t03079H Brassica oleracea HOM05D007409 ORTHO05D009264 3.7e-13 79.0 143 30.1
FAN12G2839 Fragaria x ananassa HOM05D007409 ORTHO05D009264 4.9e-13 78.6 53 69.8
COL.COLO4_34570 Corchorus olitorius HOM05D007409 ORTHO05D009264 8.3e-13 77.8 74 48.6
A01p25200 Brassica napus HOM05D007409 ORTHO05D009264 2.4e-12 76.3 143 29.4
BraA01t02429Z Brassica rapa HOM05D007409 ORTHO05D009264 2.4e-12 76.3 143 29.4
QL06p012977 Quercus lobata HOM05D007409 ORTHO05D009264 4.1e-12 75.5 78 44.9
CANSAT78G0164 Cannabis sativa HOM05D007409 ORTHO05D009264 9.2e-12 74.3 72 50.0
Phvul.003G009700 Phaseolus vulgaris HOM05D007409 ORTHO05D009264 1.2e-11 73.9 74 51.4
Ciclev10004501m.g Citrus clementina HOM05D007409 ORTHO05D009264 2.1e-11 73.2 68 50.0
Glyma.20G007500 Glycine max HOM05D007409 ORTHO05D009264 2.1e-11 73.2 47 63.8
Gohir.D01G023574 Gossypium hirsutum HOM05D007409 ORTHO05D009264 2.1e-11 73.2 74 45.9
Gorai.002G031400 Gossypium raimondii HOM05D007409 ORTHO05D009264 2.1e-11 73.2 74 45.9
Duzib052G0390 Durio zibethinus HOM05D007409 ORTHO05D009264 2.7e-11 72.8 74 45.9
TPR.G18613 Trifolium pratense HOM05D007409 ORTHO05D009264 2.7e-11 72.8 152 28.9
FAN07G1068 Fragaria x ananassa HOM05D007409 ORTHO05D009264 6.0e-11 71.6 42 78.6
Thecc.04G305700 Theobroma cacao HOM05D007409 ORTHO05D009264 7.8e-11 71.2 74 45.9
TWI09G0724 Tripterygium wilfordii HOM05D007409 ORTHO05D009264 7.8e-11 71.2 73 47.9
Cfa015278 Carpinus fangiana HOM05D007409 ORTHO05D009264 1.0e-10 70.9 74 45.9
Haze_01348 Corylus avellana HOM05D007409 ORTHO05D009264 1.0e-10 70.9 74 44.6
Psat6g097560 Pisum sativum HOM05D007409 ORTHO05D009264 1.0e-10 70.9 152 28.3
Gohir.A01G035500 Gossypium hirsutum HOM05D007409 ORTHO05D009264 1.3e-10 70.5 74 44.6
Lj3g0009247 Lotus japonicus HOM05D007409 ORTHO05D009264 1.7e-10 70.1 74 45.9
Manes.11G109300 Manihot esculenta HOM05D007409 ORTHO05D009264 1.7e-10 70.1 74 43.2
ClCG06G004440 Citrullus lanatus HOM05D007409 ORTHO05D009264 3.9e-10 68.9 72 44.4
VMungo1215G2624 Vigna mungo HOM05D007409 ORTHO05D009264 3.9e-10 68.9 74 47.3
MELO3C021257.2 Cucumis melo HOM05D007409 ORTHO05D009264 5.1e-10 68.6 72 43.1
Sed0014802 Sechium edule HOM05D007409 ORTHO05D009264 2.1e-08 63.2 72 41.7
Medtr1g035250 Medicago truncatula HOM05D007409 ORTHO05D009264 3.6e-08 62.4 80 41.2
CsaV3_6G028460 Cucumis sativus L. HOM05D007409 ORTHO05D009264 8.1e-08 61.2 48 50.0
CsaV3_UNG230130 Cucumis sativus L. HOM05D007409 ORTHO05D009264 8.1e-08 61.2 48 50.0
PGR031G2326 Punica granatum HOM05D007409 ORTHO05D009264 8.1e-08 61.2 74 36.5
arahy.Tifrunner.gnm1.ann1.Q3HN13 Arachis hypogaea HOM05D062919 ORTHO05D031595 5.2e-07 58.5 43 55.8
Carub.0005s1497 Capsella rubella HOM05D007409 ORTHO05D009264 5.2e-07 58.5 58 46.6
CARHR157620 Cardamine hirsuta HOM05D007409 ORTHO05D009264 2.0e-06 56.6 58 43.1
arahy.Tifrunner.gnm1.ann1.KQ42YR Arachis hypogaea HOM05D018308 ORTHO05D003288 3.4e-06 55.8 52 46.2
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 7.6e-06 54.7 138 37.0


User provided reference genes

Program Settings