Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 7.2e-53 210.3 106 100.0
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.3e-25 119.8 79 82.3
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 6.4e-25 117.5 74 85.1
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 1.5e-21 106.3 70 78.6
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 9.5e-21 103.6 70 77.1
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 2.8e-20 102.1 70 71.4
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 2.9e-17 92.0 65 70.8
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 3.7e-17 91.7 79 59.5
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 6.4e-17 90.9 70 65.7
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.1e-16 90.1 60 68.3
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 1.4e-16 89.7 65 63.1
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 1.9e-16 89.4 65 64.6
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 3.2e-16 88.6 65 64.6
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 4.1e-16 88.2 66 65.2
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 4.1e-16 88.2 74 62.2
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 4.1e-16 88.2 56 69.6
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 5.4e-16 87.8 79 59.5
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 7.1e-16 87.4 65 61.5
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 9.2e-16 87.0 74 60.8
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.2e-15 86.7 74 59.5
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.2e-15 86.7 74 59.5
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 1.2e-15 86.7 69 63.8
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 1.6e-15 86.3 74 58.1
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.6e-15 86.3 79 58.2
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.1e-15 85.9 75 58.7
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 3.5e-15 85.1 79 57.0
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 3.5e-15 85.1 60 61.7
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 4.6e-15 84.7 70 60.0
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 4.6e-15 84.7 79 57.0
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 4.6e-15 84.7 79 55.7
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 6.0e-15 84.3 79 57.0
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 7.8e-15 84.0 70 58.6
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 1.3e-14 83.2 65 60.0
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 2.3e-14 82.4 79 54.4
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 3.0e-14 82.0 79 54.4
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 3.0e-14 82.0 70 55.7
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 3.0e-14 82.0 65 61.5
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 3.9e-14 81.6 68 58.8
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 3.9e-14 81.6 70 60.0
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 5.1e-14 81.3 70 57.1
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 6.6e-14 80.9 66 62.1
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 6.6e-14 80.9 66 60.6
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 8.6e-14 80.5 79 51.9
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 1.1e-13 80.1 60 60.0
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.1e-13 80.1 57 66.7
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 2.5e-13 79.0 74 56.8
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.3e-13 78.6 46 89.1
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 4.3e-13 78.2 66 60.6
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 5.6e-13 77.8 69 55.1
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 7.3e-13 77.4 90 48.9
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 7.3e-13 77.4 75 54.7
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 9.5e-13 77.0 90 47.8
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 9.5e-13 77.0 74 58.1
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 9.5e-13 77.0 68 58.8
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.2e-12 76.6 79 49.4
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.2e-12 76.6 79 49.4
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.1e-12 75.9 74 52.7
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 2.1e-12 75.9 74 55.4
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.8e-12 75.5 74 52.7
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 3.6e-12 75.1 74 55.4
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 6.2e-12 74.3 68 55.9
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 6.2e-12 74.3 65 55.4
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 8.1e-12 73.9 57 59.6
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 1.4e-11 73.2 74 55.4
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 1.4e-11 73.2 79 53.2
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 3.1e-11 72.0 70 55.7
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 6.8e-11 70.9 79 44.3
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 8.9e-11 70.5 65 58.5
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 1.5e-10 69.7 70 54.3
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 2.0e-10 69.3 74 48.6
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 2.6e-10 68.9 83 49.4
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 5.8e-10 67.8 70 51.4
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 5.8e-10 67.8 87 44.8
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 7.6e-10 67.4 80 45.0
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 9.9e-10 67.0 75 46.7
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 4.9e-09 64.7 54 57.4
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 4.9e-09 64.7 64 50.0
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 8.4e-09 63.9 64 46.9
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 8.4e-09 63.9 74 48.6
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 1.1e-08 63.5 74 50.0
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 2.4e-08 62.4 65 50.8
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 2.4e-08 62.4 64 50.0
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 3.2e-08 62.0 64 50.0
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 3.2e-08 62.0 64 50.0
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 3.2e-08 62.0 64 50.0
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 3.2e-08 62.0 64 50.0
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 3.2e-08 62.0 64 50.0
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 3.2e-08 62.0 64 50.0
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 4.1e-08 61.6 55 52.7
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 9.2e-08 60.5 64 48.4
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.2e-07 60.1 64 46.9
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 2.1e-07 59.3 59 47.5
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 6.0e-07 57.8 43 58.1
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 3.0e-06 55.5 66 47.0
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 5.1e-06 54.7 60 48.3
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 6.6e-06 54.3 61 45.9


User provided reference genes

Program Settings