Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 7.7e-80 300.8 201 100.0
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 1.3e-66 256.9 204 89.2
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.3e-66 256.9 204 89.2
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 2.8e-66 255.8 204 88.7
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.2e-61 240.4 201 87.1
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 3.0e-60 235.7 201 86.6
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 1.2e-59 233.8 204 85.8
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 4.7e-53 211.8 204 81.4
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 3.4e-43 179.1 190 58.9
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 1.3e-42 177.2 205 59.0
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 9.5e-38 161.0 199 55.3
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 1.6e-37 160.2 201 62.2
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 2.1e-37 159.8 196 68.9
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 1.8e-36 156.8 196 67.9
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 2.3e-36 156.4 201 54.2
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 7.5e-35 151.4 203 57.6
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 3.7e-34 149.1 192 49.0
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 4.9e-34 148.7 202 47.5
TWI73G1002 Tripterygium wilfordii HOM05D007152 ORTHO05D008912 1.2e-32 144.1 200 51.5
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 1.6e-32 143.7 214 48.1
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 6.0e-32 141.7 212 46.7
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 6.0e-32 141.7 198 54.5
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 1.3e-31 140.6 208 49.0
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 5.1e-31 138.7 197 47.7
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 6.6e-31 138.3 211 45.5
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 1.9e-30 136.7 211 45.0
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 3.3e-30 136.0 202 48.0
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 3.3e-30 136.0 207 42.5
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 4.3e-30 135.6 201 55.7
Manes.03G199400 Manihot esculenta HOM05D007152 ORTHO05D008912 2.1e-29 133.3 204 47.1
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 2.8e-29 132.9 206 44.7
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 3.6e-29 132.5 206 42.2
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 4.7e-29 132.1 204 56.9
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 4.7e-29 132.1 206 61.7
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 1.2e-27 127.5 206 43.2
Phvul.003G108000 Phaseolus vulgaris HOM05D007152 ORTHO05D008912 5.8e-27 125.2 201 45.8
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 7.6e-27 124.8 207 47.3
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 8.4e-26 121.3 214 43.9
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 8.4e-26 121.3 203 39.9
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 1.4e-25 120.6 166 46.4
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 1.4e-25 120.6 203 47.3
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 2.4e-25 119.8 149 62.4
VMungo1215G1115 Vigna mungo HOM05D007152 ORTHO05D008912 3.2e-25 119.4 202 45.5
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 4.2e-25 119.0 210 44.3
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 7.1e-25 118.2 208 47.6
Aqoxy2G02883 Aquilegia oxysepala HOM05D007152 ORTHO05D008912 1.2e-24 117.5 207 42.0
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 1.6e-24 117.1 167 64.1
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 2.1e-24 116.7 210 51.4
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 2.1e-24 116.7 209 51.2
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 7.8e-24 114.8 193 46.1
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 1.0e-23 114.4 201 45.3
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 1.3e-23 114.0 202 38.6
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 2.3e-23 113.2 207 43.5
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 3.0e-23 112.8 210 47.6
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 3.9e-23 112.5 205 38.5
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 6.6e-23 111.7 206 39.3
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 8.7e-23 111.3 204 42.2
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 8.7e-23 111.3 204 42.2
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 8.7e-23 111.3 205 39.5
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 1.5e-22 110.5 202 37.1
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 1.9e-22 110.2 205 42.4
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 2.5e-22 109.8 172 58.1
Manes.15G009801 Manihot esculenta HOM05D007152 ORTHO05D008912 3.3e-22 109.4 72 70.8
Potri.010G006600 Populus trichocarpa HOM05D007152 ORTHO05D008912 3.3e-22 109.4 76 72.4
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 7.3e-22 108.2 205 48.8
Atru.chr4.2916 Acer truncatum HOM05D007152 ORTHO05D008912 1.6e-21 107.1 209 42.6
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 2.8e-21 106.3 172 44.2
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 4.7e-21 105.5 208 45.2
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 8.1e-21 104.8 183 38.3
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 1.1e-20 104.4 203 43.3
Sabra10G0005500 Salix brachista HOM05D007152 ORTHO05D008912 1.1e-20 104.4 76 68.4
Potri.008G211000 Populus trichocarpa HOM05D007152 ORTHO05D008912 2.4e-20 103.2 206 45.1
Dinv29715 Davidia involucrata HOM05D007152 ORTHO05D008912 3.1e-20 102.8 160 66.2
Actinidia13384 Actinidia chinensis HOM05D007152 ORTHO05D008912 6.9e-20 101.7 187 55.6
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 3.4e-19 99.4 211 41.7
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 3.4e-19 99.4 192 46.4
Eucgr.B01571 Eucalyptus grandis HOM05D007152 ORTHO05D008912 4.4e-19 99.0 148 53.4
Ciclev10006039m.g Citrus clementina HOM05D007152 ORTHO05D008912 1.7e-18 97.1 203 51.2
Nn4g25735 Nelumbo nucifera HOM05D007152 ORTHO05D008912 1.7e-18 97.1 160 45.0
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 1.1e-17 94.4 73 58.9
Lalb_Chr12g0201151 Lupinus albus HOM05D007152 ORTHO05D008912 2.4e-17 93.2 147 50.3
Sp3g05760 Schrenkiella parvula HOM05D007152 ORTHO05D008912 3.2e-17 92.8 208 42.3
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 7.1e-17 91.7 201 37.8
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 7.1e-17 91.7 150 50.0
A03p34880 Brassica napus HOM05D007152 ORTHO05D008912 3.5e-16 89.4 62 69.4
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 3.5e-16 89.4 204 40.7
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 3.5e-16 89.4 204 40.7
Eucgr.G02132 Eucalyptus grandis HOM05D007152 ORTHO05D008912 4.6e-16 89.0 71 63.4
Eucgr.G02139 Eucalyptus grandis HOM05D007152 ORTHO05D008912 6.0e-16 88.6 76 61.8
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 2.3e-15 86.7 172 51.2
Sabra08G0151100 Salix brachista HOM05D007152 ORTHO05D008912 6.6e-15 85.1 66 63.6
TPR.G22774 Trifolium pratense HOM05D007152 ORTHO05D008912 1.1e-14 84.3 73 56.2
AUR62018060 Chenopodium quinoa HOM05D007152 ORTHO05D008912 1.9e-14 83.6 151 61.6
RcHm_v2.0_Chr7g0221621 Rosa chinensis HOM05D007152 ORTHO05D008912 2.5e-14 83.2 49 79.6
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 1.6e-13 80.5 201 35.8
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 4.8e-13 79.0 72 59.7
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 4.8e-13 79.0 60 65.0
Ah.04g153700 Amaranthus hybridus HOM05D007152 ORTHO05D008912 1.1e-12 77.8 171 51.5
HanXRQChr07g0199211 Helianthus annuus HOM05D007152 ORTHO05D008912 1.1e-12 77.8 64 62.5
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 1.4e-12 77.4 199 32.2
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 2.4e-12 76.6 66 60.6
PSO407G0318 Papaver somniferum HOM05D007152 ORTHO05D008912 1.2e-11 74.3 212 34.9
ECA240G1188 Erigeron canadensis HOM05D007152 ORTHO05D008912 1.1e-09 67.8 46 63.0
ATR0693G346 Amborella trichopoda HOM05D007152 ORTHO05D008912 2.1e-08 63.5 199 31.2
Dinv28193 Davidia involucrata HOM05D007152 ORTHO05D008912 5.1e-07 58.9 30 80.0
CDE02G4694 Ceratophyllum demersum HOM05D007152 ORTHO05D008912 8.7e-07 58.2 160 36.2
CDE09G0901 Ceratophyllum demersum HOM05D007152 ORTHO05D008912 4.3e-06 55.8 85 38.8


User provided reference genes

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