Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.7e-245 852.4 490 100.0
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 2.8e-192 675.6 494 81.0
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.8e-192 675.6 494 81.0
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.7e-192 675.2 494 81.0
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 6.9e-183 644.4 496 78.0
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 5.5e-180 634.8 494 75.3
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 2.0e-174 616.3 502 74.5
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 3.3e-161 572.4 512 66.4
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 2.1e-131 473.4 525 62.5
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 1.0e-125 454.5 512 55.7
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 1.9e-124 450.3 510 58.6
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 3.3e-124 449.5 516 59.1
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 7.3e-124 448.4 524 62.2
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 1.8e-122 443.7 509 55.8
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 8.9e-122 441.4 517 60.2
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 4.4e-121 439.1 512 54.7
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 5.8e-121 438.7 518 59.3
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 2.4e-119 433.3 519 57.6
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 3.2e-119 433.0 511 53.8
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 1.2e-118 431.0 521 53.0
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 2.7e-118 429.9 527 59.8
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 6.6e-117 425.2 513 57.9
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 7.3e-116 421.8 520 55.2
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 4.0e-114 416.0 501 53.3
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 5.2e-114 415.6 508 56.9
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 1.2e-113 414.5 520 58.5
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 9.9e-113 411.4 520 55.6
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 1.3e-112 411.0 498 61.0
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.9e-111 407.1 515 55.7
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 3.2e-111 406.4 480 59.2
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 7.1e-111 405.2 518 54.4
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 2.7e-110 403.3 528 55.5
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 1.3e-109 401.0 530 54.9
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 6.6e-109 398.7 502 57.6
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 8.6e-109 398.3 502 57.4
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 1.9e-108 397.1 512 56.2
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.9e-108 397.1 517 54.5
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 4.3e-108 396.0 514 54.9
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.2e-107 394.4 510 54.3
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 3.1e-106 389.8 479 53.9
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 5.2e-106 389.0 539 50.5
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 1.5e-105 387.5 460 57.8
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 2.6e-105 386.7 517 55.9
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 4.4e-105 386.0 539 49.9
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 1.4e-103 380.9 503 54.5
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 4.2e-103 379.4 500 55.4
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 3.5e-102 376.3 463 52.5
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 1.3e-101 374.4 558 49.3
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.3e-101 374.4 487 50.7
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 5.1e-101 372.5 544 48.7
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 6.6e-101 372.1 521 52.0
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 1.5e-100 370.9 497 51.5
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 2.5e-100 370.2 514 48.4
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 3.3e-100 369.8 501 49.1
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 3.3e-100 369.8 518 48.3
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 7.3e-100 368.6 529 47.4
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 9.6e-100 368.2 458 52.8
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 6.2e-99 365.5 513 51.5
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 1.8e-98 364.0 466 54.7
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 4.0e-98 362.8 511 47.0
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 9.0e-98 361.7 475 53.3
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 4.4e-97 359.4 480 56.7
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 4.4e-97 359.4 493 53.5
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 5.8e-97 359.0 519 48.6
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 9.9e-97 358.2 494 49.0
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 2.9e-96 356.7 470 50.4
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 8.4e-96 355.1 489 49.1
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 8.4e-96 355.1 463 53.3
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 4.2e-95 352.8 569 44.5
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 9.3e-95 351.7 465 51.2
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 9.3e-95 351.7 528 47.2
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 4.6e-94 349.4 484 51.4
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 6.6e-93 345.5 517 48.5
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 8.7e-93 345.1 512 45.1
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 1.1e-92 344.7 503 55.7
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 5.6e-92 342.4 479 54.5
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 2.1e-91 340.5 484 48.6
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 3.6e-91 339.7 495 51.1
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 6.2e-91 339.0 502 46.2
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 4.0e-90 336.3 491 46.8
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 4.0e-90 336.3 484 47.3
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 4.0e-90 336.3 524 45.4
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 2.6e-89 333.6 492 53.5
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 9.9e-89 331.6 481 53.0
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 2.2e-88 330.5 506 49.8
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 1.9e-87 327.4 491 46.2
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 4.2e-87 326.2 495 52.3
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 2.7e-86 323.6 496 50.6
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 2.3e-85 320.5 464 52.2
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 3.9e-85 319.7 517 51.3
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 3.9e-85 319.7 464 52.4
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 2.1e-83 313.9 491 50.1
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 8.1e-83 312.0 553 48.1
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 1.5e-81 307.8 456 46.9
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 2.6e-81 307.0 436 47.2
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 1.2e-78 298.1 520 43.3
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 1.0e-77 295.0 297 60.6
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.9e-68 264.2 303 55.1
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 5.7e-68 262.7 288 61.5
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.8e-66 257.7 326 58.9
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 3.4e-65 253.4 497 39.6
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 7.7e-65 252.3 527 39.7
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.3e-64 251.5 300 53.0
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.9e-64 250.4 290 53.1
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 2.5e-60 237.3 512 39.5
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 1.1e-55 221.9 507 39.4
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 1.2e-54 218.4 529 39.7
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 3.3e-52 210.3 259 58.3
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 5.3e-50 203.0 576 34.7
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 6.1e-46 189.5 293 47.1
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 1.7e-43 181.4 299 44.8
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 1.7e-43 181.4 505 40.0
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 2.2e-43 181.0 152 63.8
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 1.3e-32 145.2 93 84.9
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 3.8e-32 143.7 156 59.6
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 6.5e-32 142.9 158 56.3
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 3.0e-29 134.0 128 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 2.0e-28 131.3 221 49.3
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 2.6e-28 131.0 317 35.3
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 3.1e-26 124.0 72 81.9
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 7.0e-26 122.9 136 54.4
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 5.0e-24 116.7 72 79.2
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 2.0e-20 104.8 329 31.6
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 9.8e-20 102.4 151 39.7
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.6e-17 95.1 96 50.0
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 3.9e-16 90.5 280 33.2
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 1.2e-14 85.5 483 26.3
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 6.2e-14 83.2 145 40.0
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-11 74.7 93 36.6
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 1.0e-08 65.9 83 34.9
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.9e-07 61.6 44 75.0
MD13G1163600 Malus domestica HOM05D005806 ORTHO05D007119 1.2e-06 58.9 30 93.3


User provided reference genes

Program Settings