Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 3.9e-131 471.5 240 100.0
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 8.6e-94 347.4 237 81.0
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 9.8e-90 334.0 236 78.4
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 4.9e-89 331.6 236 78.0
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.8e-88 329.7 236 77.5
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 3.3e-85 318.9 237 73.4
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 2.3e-83 312.8 237 71.7
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 3.4e-82 308.9 237 71.3
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 9.5e-77 290.8 237 66.2
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 2.1e-76 289.7 237 67.1
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 4.7e-76 288.5 237 66.2
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 6.2e-76 288.1 237 66.2
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.1e-75 287.3 237 64.1
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.3e-75 286.2 237 66.7
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 5.2e-75 285.0 237 66.2
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.2e-74 283.9 237 66.2
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.5e-74 283.5 237 65.4
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.6e-74 282.7 207 76.8
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 2.6e-74 282.7 237 67.1
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.6e-74 282.7 237 62.9
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 3.4e-74 282.3 237 65.0
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 3.4e-74 282.3 237 64.1
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 4.4e-74 282.0 237 64.6
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 5.8e-74 281.6 237 65.0
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 5.8e-74 281.6 237 64.1
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 5.8e-74 281.6 237 65.4
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 9.8e-74 280.8 236 64.8
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 9.8e-74 280.8 237 65.0
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 9.8e-74 280.8 237 65.0
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 9.8e-74 280.8 237 65.4
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 2.2e-73 279.6 237 65.0
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.2e-73 279.6 237 65.0
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 4.9e-73 278.5 237 65.4
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 6.4e-73 278.1 238 63.0
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 6.4e-73 278.1 237 64.6
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 8.3e-73 277.7 237 62.9
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 8.3e-73 277.7 234 65.0
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.4e-72 276.2 237 64.6
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 2.4e-72 276.2 237 62.9
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 3.2e-72 275.8 237 64.6
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.2e-72 275.8 238 68.5
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 3.2e-72 275.8 237 63.7
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 3.2e-72 275.8 237 63.7
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 4.1e-72 275.4 237 64.1
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 7.1e-72 274.6 236 61.9
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 7.1e-72 274.6 271 61.3
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 9.2e-72 274.2 236 62.3
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.2e-71 273.9 236 63.1
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 1.6e-71 273.5 237 62.0
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 2.1e-71 273.1 237 63.7
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.1e-71 273.1 236 64.8
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 3.5e-71 272.3 237 63.3
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 3.5e-71 272.3 237 62.4
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 4.6e-71 271.9 237 61.2
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 6.0e-71 271.6 236 63.6
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 1.0e-70 270.8 237 62.0
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 1.0e-70 270.8 237 61.6
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 1.7e-70 270.0 236 62.3
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 3.0e-70 269.2 237 62.4
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 3.0e-70 269.2 236 63.1
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 3.0e-70 269.2 235 63.4
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 3.0e-70 269.2 237 60.8
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 3.9e-70 268.9 261 59.8
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 8.6e-70 267.7 235 63.4
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 2.5e-69 266.2 237 61.6
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 2.5e-69 266.2 274 55.1
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 5.6e-69 265.0 237 62.4
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 7.3e-69 264.6 237 61.6
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 7.3e-69 264.6 236 62.3
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 7.3e-69 264.6 236 61.4
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.2e-68 263.8 237 60.8
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 1.6e-68 263.5 236 61.9
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 8.1e-68 261.2 235 60.9
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.4e-67 260.4 203 71.9
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 2.3e-67 259.6 236 61.4
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 3.1e-67 259.2 236 61.4
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 4.0e-67 258.8 236 60.6
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 4.0e-67 258.8 236 60.6
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 6.8e-67 258.1 236 59.7
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 2.6e-66 256.1 248 58.1
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 3.4e-66 255.8 235 60.4
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 4.4e-66 255.4 236 59.7
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 4.4e-66 255.4 241 58.9
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.8e-66 255.0 236 59.7
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 5.8e-66 255.0 236 60.2
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 9.9e-66 254.2 231 60.2
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 9.9e-66 254.2 236 60.2
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 9.9e-66 254.2 231 60.2
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 1.3e-65 253.8 235 60.0
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.3e-65 253.8 237 58.2
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 1.7e-65 253.4 236 59.3
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 2.2e-65 253.1 231 60.2
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 2.9e-65 252.7 230 62.2
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 4.9e-65 251.9 235 59.6
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 4.9e-65 251.9 235 59.6
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 6.4e-65 251.5 235 59.6
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 4.1e-64 248.8 231 59.3
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 9.2e-64 247.7 205 66.8
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.2e-64 247.7 236 58.5
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 4.7e-60 235.3 224 57.6
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 8.1e-60 234.6 222 57.7
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 8.9e-59 231.1 225 57.3
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.9e-56 223.4 213 60.1
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 2.4e-56 223.0 164 73.8
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 2.4e-56 223.0 164 72.0
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 9.3e-56 221.1 318 44.7
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.2e-55 220.7 164 68.3
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 1.2e-55 220.7 187 65.2
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.3e-54 217.2 232 56.0
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 4.0e-51 205.7 237 51.1
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 9.3e-48 194.5 239 48.1
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.1e-47 193.4 144 69.4
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 3.5e-47 192.6 237 46.8
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 8.7e-46 188.0 237 45.6
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 5.6e-45 185.3 168 62.5
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.3e-41 174.1 241 44.8
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.7e-41 173.7 134 66.4
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.6e-36 157.1 143 58.7
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 4.0e-35 152.5 235 38.3
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 5.5e-32 142.1 106 73.6
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.9e-21 107.1 144 43.1
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 2.4e-19 100.1 80 67.5
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 5.3e-19 99.0 86 62.8
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 6.9e-19 98.6 79 65.8
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.6e-13 80.1 91 48.4
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 2.2e-12 77.0 39 97.4
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 4.8e-12 75.9 51 68.6
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.7e-06 55.5 42 61.9


User provided reference genes

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