Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 0.0e+00 1358.6 687 100.0
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 0.0e+00 1234.2 687 91.3
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 0.0e+00 1231.9 687 90.4
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 0.0e+00 1219.1 687 90.0
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 0.0e+00 1205.3 673 91.4
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 0.0e+00 1202.6 687 88.8
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 1.9e-287 992.3 688 74.7
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 2.9e-280 968.4 698 72.9
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 3.0e-269 931.8 695 72.8
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 4.3e-247 858.2 696 67.0
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 2.1e-241 839.3 717 62.1
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 6.6e-232 807.7 694 63.8
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 1.9e-231 806.2 683 64.9
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 9.9e-228 793.9 690 62.9
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 6.6e-224 781.2 865 52.1
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 7.9e-217 757.7 694 60.4
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 6.5e-211 738.0 689 59.5
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.0e-208 730.7 690 60.1
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 3.9e-208 728.8 695 59.4
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.8e-205 719.9 697 59.7
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 9.0e-205 717.6 701 57.5
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.9e-202 709.9 682 58.8
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.0e-200 704.1 695 58.6
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 1.9e-199 699.9 674 58.5
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 3.3e-199 699.1 685 58.0
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 4.8e-198 695.3 678 57.5
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 1.1e-197 694.1 695 58.0
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 4.5e-196 688.7 685 57.4
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 7.7e-196 688.0 694 55.0
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 2.2e-195 686.4 701 57.5
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 2.5e-194 682.9 669 55.8
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 3.2e-194 682.6 651 57.6
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 5.5e-194 681.8 690 57.0
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 1.5e-191 673.7 678 56.6
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 1.5e-191 673.7 710 56.3
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 3.3e-191 672.5 679 57.0
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 4.3e-191 672.2 695 57.0
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 1.7e-190 670.2 698 55.6
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 1.7e-190 670.2 700 56.6
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.8e-189 666.8 689 56.7
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 5.3e-189 665.2 683 55.6
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 6.9e-189 664.8 674 57.0
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.2e-188 664.1 686 56.3
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 3.4e-188 662.5 695 56.7
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.9e-186 656.8 730 54.0
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 7.2e-186 654.8 697 54.8
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 7.2e-186 654.8 610 59.3
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 4.7e-185 652.1 606 60.4
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 2.1e-177 626.7 629 56.8
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 1.4e-176 624.0 696 53.4
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 6.7e-176 621.7 687 53.4
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 2.2e-174 616.7 704 52.4
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 7.7e-172 608.2 702 52.3
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 7.7e-172 608.2 721 50.8
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 3.2e-170 602.8 606 57.6
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 7.2e-170 601.7 685 52.8
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.0e-168 597.8 710 51.8
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 7.5e-167 591.7 667 52.2
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 7.5e-167 591.7 681 50.7
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 7.5e-167 591.7 678 52.7
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 7.5e-167 591.7 746 50.1
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 1.3e-166 590.9 742 49.9
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 2.2e-166 590.1 706 51.7
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 5.4e-165 585.5 668 52.1
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 9.1e-165 584.7 677 51.1
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.6e-164 583.9 670 51.0
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 2.7e-164 583.2 669 51.4
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 2.7e-164 583.2 691 52.0
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 4.5e-164 582.4 668 51.8
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 1.0e-163 581.3 691 52.0
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 2.2e-163 580.1 670 51.8
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 2.2e-163 580.1 671 51.9
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 3.8e-163 579.3 675 51.0
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 8.5e-163 578.2 672 52.1
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 4.2e-162 575.9 698 50.3
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 7.2e-162 575.1 666 51.1
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 7.2e-162 575.1 678 51.6
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 9.4e-162 574.7 675 50.1
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 2.7e-161 573.2 670 50.4
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 3.6e-161 572.8 735 48.7
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 3.6e-161 572.8 592 54.7
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 8.0e-161 571.6 672 53.4
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 2.3e-160 570.1 674 52.4
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 1.5e-159 567.4 674 52.1
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 1.1e-157 561.2 679 51.0
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.7e-156 556.6 708 49.4
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.1e-153 547.0 703 48.8
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 2.1e-153 547.0 678 49.1
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 2.8e-153 546.6 613 52.5
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 1.4e-152 544.3 667 51.7
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.2e-151 541.2 667 51.4
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 3.2e-149 533.1 668 51.8
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 4.1e-149 532.7 641 52.9
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 5.4e-149 532.3 665 50.8
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 2.0e-148 530.4 683 48.6
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 2.7e-148 530.0 632 51.3
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 4.6e-148 529.3 645 49.3
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.9e-147 526.2 678 49.1
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.9e-146 523.9 706 48.2
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.1e-145 520.4 683 48.5
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 4.7e-145 519.2 697 47.5
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.8e-144 517.3 690 47.1
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 3.1e-144 516.5 734 45.6
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 7.5e-143 511.9 691 48.2
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.1e-141 508.1 718 45.8
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.7e-139 500.7 586 49.5
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.8e-136 490.7 609 48.8
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 4.1e-133 479.6 697 45.1
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.2e-132 478.0 624 47.8
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 6.2e-129 465.7 784 41.5
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 2.0e-127 460.7 679 45.5
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 4.4e-127 459.5 608 47.7
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 6.2e-121 439.1 684 43.4
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.6e-119 433.7 509 51.3
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 1.9e-114 417.5 671 43.1
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 2.4e-109 400.6 649 41.1
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 2.8e-105 387.1 432 53.5
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 3.8e-102 376.7 613 41.1
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 3.4e-95 353.6 727 36.5
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 9.7e-82 308.9 604 37.9
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 6.3e-73 279.6 591 36.0
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 1.2e-68 265.4 720 33.2
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 9.1e-64 249.2 318 48.1
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 4.5e-63 246.9 662 32.3
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 5.2e-59 233.4 674 31.2
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.3e-51 208.0 173 65.3
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 2.2e-49 201.4 237 49.4
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.4e-48 198.0 172 62.8
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.6e-44 185.3 226 50.9
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 5.2e-43 180.3 499 31.1
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 2.3e-35 154.8 790 27.3
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 2.0e-34 151.8 136 62.5
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 3.3e-29 134.4 99 70.7
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 4.0e-27 127.5 138 53.6
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 6.4e-25 120.2 675 24.3
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.3e-22 112.5 105 50.5
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 1.2e-15 89.4 211 30.3
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.8e-10 70.5 109 45.0
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 1.3e-09 69.3 59 54.2
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 7.1e-08 63.5 88 50.0


User provided reference genes

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