Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 1.9e-119 432.6 220 100.0
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 3.9e-117 424.9 220 96.8
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.7e-104 382.9 218 88.1
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 8.4e-104 380.6 214 85.0
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.9e-103 379.4 212 85.8
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.4e-103 379.0 216 84.7
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 3.2e-103 378.6 216 84.7
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 5.4e-103 377.9 216 84.7
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 3.5e-102 375.2 214 84.1
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 7.8e-102 374.0 218 86.2
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 3.0e-101 372.1 213 85.0
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 3.0e-101 372.1 212 83.5
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 5.1e-101 371.3 216 83.8
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 5.1e-101 371.3 216 83.3
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 6.6e-101 370.9 212 85.8
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 8.7e-101 370.5 217 82.9
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 4.3e-100 368.2 216 82.9
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 7.3e-100 367.5 216 81.9
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 7.3e-100 367.5 217 82.9
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 7.3e-100 367.5 213 82.6
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 9.6e-100 367.1 217 85.7
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 9.6e-100 367.1 212 84.0
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.1e-99 365.9 213 83.1
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 2.8e-99 365.5 213 81.7
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 6.2e-99 364.4 216 81.0
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 6.2e-99 364.4 215 82.3
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 8.1e-99 364.0 213 81.7
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.1e-98 363.6 213 81.7
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.4e-98 363.2 228 78.9
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.4e-98 363.2 215 81.9
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.8e-98 362.8 210 83.8
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.8e-98 362.8 213 81.7
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.8e-98 362.8 213 81.7
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 2.4e-98 362.5 218 79.4
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.1e-98 362.1 215 81.4
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.1e-98 362.1 212 82.1
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 4.0e-98 361.7 210 82.9
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 4.0e-98 361.7 210 82.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 5.3e-98 361.3 210 83.3
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 6.9e-98 360.9 213 82.6
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 9.0e-98 360.5 210 83.3
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 9.0e-98 360.5 213 81.7
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 1.2e-97 360.1 216 80.1
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 3.4e-97 358.6 214 80.4
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 3.4e-97 358.6 212 82.5
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 4.4e-97 358.2 216 81.0
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 4.4e-97 358.2 213 81.2
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 5.8e-97 357.8 216 81.9
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 9.9e-97 357.1 217 78.8
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 9.9e-97 357.1 217 79.7
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 9.9e-97 357.1 218 80.3
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 2.9e-96 355.5 216 80.6
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 4.9e-96 354.8 213 81.7
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 4.9e-96 354.8 217 78.8
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.4e-95 353.2 211 79.6
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.4e-95 352.4 214 79.0
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 5.4e-95 351.3 212 78.8
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 5.4e-95 351.3 214 78.0
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 7.1e-95 350.9 214 79.0
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 7.1e-95 350.9 214 79.0
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 7.1e-95 350.9 215 79.5
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.2e-94 350.1 213 78.4
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.6e-94 349.7 214 78.5
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 1.6e-94 349.7 216 80.1
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 2.1e-94 349.4 214 78.5
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 3.5e-94 348.6 214 78.5
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 3.5e-94 348.6 214 78.0
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 3.5e-94 348.6 211 80.1
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.6e-94 348.2 214 78.0
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 4.6e-94 348.2 214 78.0
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.0e-94 347.8 251 70.5
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.3e-93 346.7 214 77.6
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.3e-93 346.7 215 78.1
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 2.3e-93 345.9 211 79.1
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 2.3e-93 345.9 211 79.1
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 3.0e-93 345.5 209 80.4
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 5.1e-93 344.7 214 77.1
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 2.5e-92 342.4 212 78.8
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 2.5e-92 342.4 213 77.0
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 4.3e-92 341.7 217 75.1
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 5.6e-92 341.3 214 77.6
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 6.2e-91 337.8 257 66.1
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 5.3e-90 334.7 214 74.3
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 3.4e-89 332.0 221 72.9
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 4.5e-89 331.6 213 73.7
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.3e-88 330.1 212 75.9
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 2.2e-88 329.3 216 75.9
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 2.9e-88 328.9 221 71.5
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.8e-88 328.6 214 73.8
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.9e-87 326.2 221 71.9
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 5.5e-87 324.7 211 74.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 5.5e-87 324.7 211 74.9
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 7.1e-87 324.3 268 63.4
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.2e-86 323.6 214 72.4
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 3.5e-86 322.0 216 71.8
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 3.5e-86 322.0 213 74.6
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 7.9e-86 320.9 214 71.5
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 7.9e-86 320.9 214 71.5
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.8e-85 319.7 214 71.0
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.8e-85 319.7 214 71.0
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 3.0e-85 318.9 214 70.6
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 3.9e-85 318.5 214 70.6
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.5e-84 316.6 214 70.1
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.3e-84 315.5 189 82.0
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 8.1e-83 310.8 212 71.7
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.1e-82 310.5 213 73.2
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.8e-82 309.7 214 68.2
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.0e-82 307.4 212 70.8
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.9e-79 299.7 214 70.1
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.9e-79 299.7 212 68.9
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 6.0e-78 294.7 212 67.9
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 3.9e-77 292.0 214 66.4
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.1e-77 291.6 215 63.3
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.1e-76 290.4 177 78.5
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.5e-73 280.0 144 96.5
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 8.5e-72 274.2 181 70.7
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.7e-67 258.8 203 62.1
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.1e-66 255.8 130 98.5
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 7.2e-63 244.6 124 98.4
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 2.5e-55 219.5 124 82.3
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 3.0e-53 212.6 126 81.0
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.9e-53 212.2 224 50.4
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 6.7e-53 211.5 128 78.9
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.2e-46 190.7 149 65.1
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.0e-41 173.3 124 66.9
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 3.8e-40 169.1 126 72.2
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.5e-39 166.4 104 74.0
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 5.5e-39 165.2 112 72.3
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.8e-35 152.9 88 81.8
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.4e-34 148.7 86 79.1
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 9.5e-31 137.9 219 38.8
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 1.6e-30 137.1 202 40.1
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.6e-30 136.0 93 72.0
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 6.1e-30 135.2 164 43.9
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.0e-29 134.4 189 40.2
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.2e-28 131.0 88 69.3
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 5.7e-28 128.6 76 82.9
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.2e-27 126.7 93 66.7
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 8.3e-27 124.8 190 42.1
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 1.4e-26 124.0 187 37.4
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 4.1e-26 122.5 219 35.2
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.0e-24 117.9 75 80.0
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.1e-23 114.4 65 89.2
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 3.3e-23 112.8 198 36.4
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 2.8e-22 109.8 67 76.1
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 3.6e-22 109.4 67 74.6
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.7e-22 109.0 212 33.0
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.0e-21 107.8 88 61.4
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 3.0e-21 106.3 81 66.7
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 6.8e-21 105.1 194 34.5
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.6e-20 103.2 170 34.7
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 6.4e-19 98.6 60 76.7
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.1e-18 97.8 89 59.6
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.7e-17 93.2 53 84.9
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 5.9e-17 92.0 52 84.6
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 5.9e-17 92.0 66 69.7
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 1.0e-16 91.3 59 76.3
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 2.1e-14 83.6 80 53.8
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 2.6e-12 76.6 45 77.8
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 4.4e-12 75.9 88 50.0
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 2.2e-11 73.6 39 94.9
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 8.3e-11 71.6 82 48.8
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 1.1e-10 71.2 88 48.9
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 1.1e-10 71.2 68 51.5
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 2.4e-10 70.1 65 52.3
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 3.2e-10 69.7 64 53.1
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 7.0e-10 68.6 59 55.9
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 2.7e-09 66.6 57 56.1
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 2.5e-07 60.1 60 55.0


User provided reference genes

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