Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 2261.9 1126 100.0
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1999.6 1176 86.0
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1921.4 1059 90.0
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1822.8 1133 80.3
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1808.9 1062 86.3
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1758.8 998 87.8
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1555.4 1130 68.5
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 0.0e+00 1524.2 869 88.3
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1520.8 1133 67.3
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1506.5 1136 66.9
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1385.5 1156 62.5
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1374.0 1080 63.2
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1343.6 1118 61.4
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1338.2 1039 63.4
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1329.3 1049 62.7
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1323.1 1093 60.9
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1321.6 1074 61.5
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1319.7 1116 60.7
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1315.4 1138 59.8
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1312.7 1104 60.3
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1312.7 1061 62.1
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1312.7 1061 62.1
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1308.1 1139 58.0
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1300.8 1043 61.7
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1297.7 1130 58.0
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1295.0 1137 57.7
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1294.6 1096 59.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1294.6 1023 63.0
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1293.5 1127 58.7
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1289.2 1087 59.9
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1286.9 1043 60.8
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1284.6 1043 61.0
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1283.1 1074 61.0
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1259.2 1142 56.8
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1233.4 1111 56.3
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1229.2 1065 58.2
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1225.3 1131 54.3
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1221.5 1025 58.8
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1209.5 1128 54.4
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1206.0 1036 58.3
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1203.3 1091 56.8
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1199.1 1033 57.9
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1187.9 1127 53.0
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1184.5 1133 54.5
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1177.9 911 63.2
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1161.0 1039 56.7
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1159.1 1116 52.5
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1152.5 1056 55.0
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1148.7 1088 53.5
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1146.3 1068 54.6
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1146.0 1166 50.3
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1137.1 1100 52.2
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1134.8 1097 52.7
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1124.8 1043 54.8
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1122.8 872 63.0
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1120.9 1139 52.9
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1111.7 1092 52.1
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1108.6 1132 51.1
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1104.7 1130 52.0
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1102.0 1124 50.2
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1101.7 1076 52.3
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1098.6 985 55.9
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1095.9 1119 52.1
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 0.0e+00 1087.0 778 69.0
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1085.1 1111 51.5
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1084.7 1117 51.2
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1083.6 1076 51.7
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1082.8 1111 51.3
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1082.0 1045 52.7
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 5.4e-311 1071.2 1120 50.8
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 4.2e-308 1061.6 983 53.1
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.0e-306 1057.0 1036 52.8
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 6.7e-306 1054.3 935 56.6
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.0e-301 1040.4 1025 51.1
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 1.9e-300 1036.2 1042 51.0
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.5e-294 1015.0 897 56.7
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 4.8e-288 995.0 881 58.1
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 4.1e-287 991.9 896 55.6
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 4.5e-286 988.4 883 57.4
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 2.8e-280 969.1 1066 47.3
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 4.2e-276 955.3 1171 44.4
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.7e-269 933.3 753 62.8
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.9e-268 929.9 1089 46.1
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.2e-267 927.2 1105 46.2
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 6.1e-259 898.3 693 63.5
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 3.0e-258 896.0 1111 45.8
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 7.3e-244 848.2 944 48.6
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.6e-243 847.0 990 43.9
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 2.3e-237 826.6 672 61.5
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 2.0e-230 803.5 735 56.3
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 2.8e-219 766.5 1086 40.7
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 1.5e-217 760.8 722 52.9
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 9.9e-217 758.1 1114 39.5
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.1e-214 750.4 642 59.3
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.4e-210 736.9 550 65.6
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 4.8e-179 632.9 485 63.7
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.4e-175 621.3 649 48.5
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 4.8e-171 606.3 582 52.4
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.2e-132 478.8 401 62.3
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 9.8e-124 449.1 375 59.7
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.3e-120 438.7 381 57.0
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.0e-104 386.0 346 55.5
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.6e-86 324.3 1042 26.7
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 8.4e-83 313.2 220 67.7
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.1e-77 296.2 228 61.0
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 5.8e-76 290.4 226 60.2
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 5.6e-71 273.9 302 46.4
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 5.1e-64 250.8 239 51.5
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 4.3e-63 247.7 207 58.9
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-62 246.1 875 24.5
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 9.0e-61 240.0 191 61.3
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.1e-57 228.8 191 59.2
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.0e-56 224.9 191 58.1
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.8e-54 218.4 174 60.9
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 4.2e-50 204.5 348 35.6
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 4.4e-47 194.5 158 60.1
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 5.3e-45 187.6 129 71.3
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 2.1e-41 175.6 206 42.2
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 8.8e-40 170.2 154 51.9
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-38 166.4 955 23.0
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.6e-36 159.5 581 25.3
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 5.9e-36 157.5 127 59.8
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.9e-34 152.5 460 24.3
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 3.2e-34 151.8 126 60.3
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 9.4e-34 150.2 138 52.9
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 8.0e-33 147.1 128 56.2
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 6.8e-32 144.1 135 50.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 3.4e-31 141.7 134 50.7
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-27 129.8 912 22.6
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 7.2e-26 124.0 115 48.7
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 1.7e-22 112.8 84 65.5
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 2.2e-22 112.5 94 56.4
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 7.0e-21 107.5 84 58.3
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.5e-20 105.1 348 26.4
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.4e-16 93.2 242 27.7
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 8.9e-16 90.5 80 57.5
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.2e-15 90.1 554 23.8
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 5.7e-15 87.8 95 43.2
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 2.4e-13 82.4 59 64.4
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.4e-13 82.4 396 24.2
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 7.0e-13 80.9 59 62.7
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 5.0e-11 74.7 57 57.9
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 8.6e-11 73.9 100 41.0
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 6.8e-08 64.3 86 41.9
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 1.3e-06 60.1 46 56.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.7e-06 59.7 59 47.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 2.2e-06 59.3 65 49.2


User provided reference genes

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