Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 2677.9 1406 100.0
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2432.9 1417 90.2
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2407.9 1410 90.3
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2402.5 1409 90.2
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 2158.3 1223 92.4
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2134.4 1223 91.4
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 2058.5 1407 77.5
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1759.2 1416 67.9
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1716.4 1418 66.2
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1631.7 1413 63.9
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1628.6 1413 62.8
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1607.0 1421 62.8
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1605.9 1407 62.5
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1593.9 1408 62.9
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 0.0e+00 1590.1 1091 77.8
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1570.4 1245 67.4
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1565.8 1418 61.0
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1563.5 1241 67.0
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1547.3 1413 61.0
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1531.5 1403 61.0
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1524.6 1412 60.3
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1523.1 1409 60.5
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1521.5 1273 63.6
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1487.2 1417 58.9
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1486.1 1401 59.9
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1484.9 1419 58.5
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1451.4 1421 56.8
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1449.1 1415 57.3
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1430.2 1426 56.2
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1383.6 1435 54.8
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1366.3 1418 53.9
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1365.1 1429 54.3
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1364.4 1429 53.3
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1352.4 1425 54.0
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1349.7 1422 53.4
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1349.3 1236 61.2
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1345.1 1429 53.5
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1325.8 1442 51.9
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1324.7 1373 53.3
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1318.9 1374 54.0
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1315.4 1354 53.6
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1314.3 1327 54.6
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1309.7 1325 54.4
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1300.0 1365 53.2
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1294.3 1426 51.3
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1291.2 1332 53.9
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1289.2 1378 53.1
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1281.5 1336 53.0
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1278.1 1364 52.3
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1275.4 1376 52.0
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1274.6 1378 52.7
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1270.0 1445 50.7
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1257.3 1406 53.1
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 0.0e+00 1221.8 1116 60.5
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1172.9 1366 49.5
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 0.0e+00 1171.8 1033 62.8
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1158.7 1204 53.5
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1148.7 1235 52.2
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 0.0e+00 1144.0 1166 54.7
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 0.0e+00 1139.8 1126 56.3
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 0.0e+00 1139.0 1024 61.4
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 0.0e+00 1084.3 1455 45.9
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.9e-311 1072.8 1038 57.5
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 3.3e-310 1068.9 1034 57.4
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.3e-298 1030.4 846 65.4
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 3.6e-293 1012.3 1435 43.8
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.8e-284 983.4 846 63.2
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 1.4e-273 947.2 1358 43.0
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 2.6e-238 830.1 1262 41.3
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 1.0e-234 818.1 1440 38.3
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 2.4e-228 797.0 990 48.3
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 3.3e-222 776.5 695 59.9
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 2.1e-208 730.7 713 57.5
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 3.1e-199 700.3 621 60.5
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 1.1e-191 675.2 908 45.9
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 3.5e-187 660.2 1395 34.5
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 4.6e-187 659.8 1344 35.1
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 4.6e-187 659.8 1373 33.9
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 8.3e-181 639.0 1437 33.6
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 1.9e-116 425.2 673 43.1
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 1.7e-104 385.6 472 48.1
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 1.9e-100 372.1 1503 26.2
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 1.8e-90 339.0 357 52.7
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 1.0e-85 323.2 336 55.1
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 8.9e-82 310.1 271 63.8
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 2.2e-80 305.4 290 57.9
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 6.8e-66 257.3 303 50.2
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 4.4e-49 201.4 266 47.7
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 6.2e-43 181.0 205 54.6
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 5.1e-37 161.4 120 72.5
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.7e-32 146.4 104 75.0
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 8.4e-32 144.1 287 36.2
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 4.3e-28 131.7 129 55.0
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 3.7e-19 102.1 171 43.3
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 3.6e-14 85.5 118 42.4
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 1.1e-10 73.9 87 44.8
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 1.3e-08 67.0 286 25.2
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 3.8e-08 65.5 118 39.8


User provided reference genes

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