Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 3.0e-57 224.9 111 100.0
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.3e-25 119.8 75 81.3
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 9.0e-22 107.1 75 76.0
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.0e-20 103.6 75 73.3
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 6.5e-20 100.9 73 75.3
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 8.4e-20 100.5 76 69.7
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 7.1e-19 97.4 76 64.5
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 7.1e-19 97.4 76 64.5
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 7.1e-19 97.4 76 64.5
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 2.7e-18 95.5 76 65.8
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 3.5e-18 95.1 76 64.5
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 3.5e-18 95.1 76 65.8
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 6.0e-18 94.4 76 63.2
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 6.0e-18 94.4 76 64.5
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 7.9e-18 94.0 76 64.5
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.0e-17 93.6 72 70.8
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.0e-17 93.6 76 63.2
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.3e-17 93.2 74 68.9
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.3e-17 93.2 80 61.2
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.3e-17 93.2 76 63.2
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.8e-17 92.8 75 65.3
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 3.0e-17 92.0 76 57.9
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.0e-17 92.0 76 57.9
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.0e-17 92.0 76 63.2
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 6.7e-17 90.9 74 63.5
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 6.7e-17 90.9 73 63.0
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 6.7e-17 90.9 74 62.2
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.9e-16 89.4 75 58.7
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 3.3e-16 88.6 76 63.2
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 4.3e-16 88.2 76 55.3
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 4.3e-16 88.2 76 59.2
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 4.3e-16 88.2 76 60.5
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 5.7e-16 87.8 76 57.9
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 7.4e-16 87.4 74 59.5
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 9.7e-16 87.0 76 63.2
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 1.6e-15 86.3 76 57.9
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.6e-15 86.3 76 59.2
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.2e-15 85.9 74 59.5
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 2.2e-15 85.9 74 59.5
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.7e-15 85.1 76 56.6
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.7e-15 85.1 78 53.8
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 4.8e-15 84.7 76 57.9
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 6.3e-15 84.3 74 58.1
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 8.2e-15 84.0 77 54.5
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.1e-14 83.6 74 58.1
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.1e-14 83.6 73 58.9
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.4e-14 83.2 76 52.6
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 2.4e-14 82.4 77 53.2
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.4e-14 82.4 75 57.3
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 6.9e-14 80.9 76 57.9
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 6.9e-14 80.9 76 52.6
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 6.9e-14 80.9 76 55.3
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 9.0e-14 80.5 76 55.3
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.2e-13 80.1 75 56.0
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.5e-13 79.7 74 54.1
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.5e-13 79.7 76 52.6
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 2.0e-13 79.3 74 55.4
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 2.6e-13 79.0 76 56.6
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 2.6e-13 79.0 74 56.8
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 3.4e-13 78.6 75 54.7
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.5e-13 78.2 75 54.7
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 4.5e-13 78.2 75 54.7
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 4.5e-13 78.2 74 55.4
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 4.5e-13 78.2 76 50.0
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 5.9e-13 77.8 74 55.4
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 5.9e-13 77.8 74 54.1
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 7.6e-13 77.4 73 52.1
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 7.6e-13 77.4 73 54.8
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.0e-12 77.0 75 54.7
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.0e-12 77.0 75 54.7
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.2e-12 75.9 74 51.4
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 2.2e-12 75.9 75 54.7
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.9e-12 75.5 78 56.4
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 3.8e-12 75.1 75 52.0
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.8e-12 75.1 73 54.8
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 5.0e-12 74.7 72 51.4
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 5.0e-12 74.7 75 50.7
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 5.0e-12 74.7 75 50.7
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 5.0e-12 74.7 75 50.7
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.1e-11 73.6 75 49.3
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.1e-11 73.6 73 53.4
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.1e-11 73.6 75 50.7
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.4e-11 73.2 73 53.4
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.4e-11 73.2 74 50.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.9e-11 72.8 76 48.7
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.9e-11 72.8 71 52.1
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.5e-11 72.4 68 55.9
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.2e-11 72.0 74 48.6
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.2e-11 72.0 77 54.5
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 4.2e-11 71.6 75 48.0
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 7.2e-11 70.9 73 50.7
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.2e-10 70.1 75 45.3
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 2.7e-10 68.9 76 44.7
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 3.6e-10 68.6 74 47.3
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 4.6e-10 68.2 76 46.1
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.6e-10 68.2 74 47.3
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.6e-10 68.2 71 53.5
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 6.1e-10 67.8 75 50.7
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 6.1e-10 67.8 76 43.4
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.9e-10 67.4 74 45.9
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.9e-10 67.4 74 45.9
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.0e-09 67.0 74 47.3
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.0e-09 67.0 76 44.7
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.0e-09 67.0 71 53.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.4e-09 66.6 71 46.5
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.8e-09 66.2 75 46.7
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.8e-09 66.2 76 40.8
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 2.3e-09 65.9 73 50.7
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 3.0e-09 65.5 75 44.0
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 3.0e-09 65.5 71 52.1
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 3.9e-09 65.1 76 42.1
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 3.9e-09 65.1 76 39.5
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 8.8e-09 63.9 73 47.9
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.5e-08 63.2 73 45.2
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 4.3e-08 61.6 78 46.2
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 9.7e-08 60.5 67 47.8
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.3e-07 60.1 75 46.7
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.2e-07 59.3 73 43.8
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.8e-07 58.2 75 40.0


User provided reference genes

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