Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 4.7e-140 501.1 242 100.0
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 4.4e-82 308.5 279 64.2
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.7e-78 296.6 265 63.0
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 8.7e-78 294.3 265 62.6
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.5e-77 293.5 268 61.9
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.3e-77 292.4 268 61.9
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.3e-68 263.8 189 70.9
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 5.3e-67 258.5 282 53.2
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 2.2e-65 253.1 283 52.3
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 2.9e-65 252.7 281 50.5
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.4e-64 250.4 283 51.9
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.6e-63 246.9 250 53.6
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 1.1e-61 240.7 282 50.7
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.5e-61 240.4 292 49.7
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.9e-61 240.0 184 65.8
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 1.9e-61 240.0 277 49.8
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 2.5e-61 239.6 277 50.5
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 5.7e-61 238.4 259 51.4
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 1.3e-60 237.3 187 63.1
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.3e-60 237.3 250 51.6
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.6e-60 236.9 285 49.8
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 3.7e-60 235.7 188 61.7
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.4e-59 233.8 258 51.9
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 3.1e-59 232.6 189 61.4
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 5.3e-59 231.9 274 49.3
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 5.3e-59 231.9 258 50.4
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 5.3e-59 231.9 189 61.9
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 9.0e-59 231.1 259 51.7
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 1.2e-58 230.7 263 49.8
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.2e-58 230.7 274 48.5
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.6e-58 229.6 285 48.4
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 4.5e-58 228.8 189 60.3
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.3e-57 227.3 187 59.4
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.7e-57 226.9 283 46.3
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 5.0e-57 225.3 288 45.8
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 5.0e-57 225.3 270 47.0
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 5.0e-57 225.3 277 47.3
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.1e-56 224.2 189 58.2
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.1e-56 224.2 273 46.9
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.1e-56 224.2 254 51.6
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 1.4e-56 223.8 276 45.3
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.9e-56 223.4 262 48.9
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 4.2e-56 222.2 278 47.1
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 5.5e-56 221.9 188 58.5
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 5.5e-56 221.9 189 60.8
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 7.2e-56 221.5 258 50.4
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 1.6e-55 220.3 188 58.5
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 1.6e-55 220.3 271 48.0
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 2.1e-55 219.9 275 46.9
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.7e-55 219.5 274 48.2
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 3.5e-55 219.2 275 47.3
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 4.6e-55 218.8 192 57.8
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.0e-54 217.6 189 57.1
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.0e-54 217.6 273 46.5
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 2.3e-54 216.5 187 56.7
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 5.1e-54 215.3 277 46.6
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 5.1e-54 215.3 188 56.4
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 6.7e-54 214.9 189 55.0
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 8.7e-54 214.5 285 44.6
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.1e-53 214.2 187 56.7
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 1.5e-53 213.8 269 45.7
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.5e-53 213.0 187 56.1
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 2.5e-53 213.0 274 46.4
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 9.7e-53 211.1 219 50.2
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.3e-52 210.7 189 54.5
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.3e-52 210.7 189 56.1
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 1.3e-52 210.7 189 55.6
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.6e-52 210.3 186 56.5
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.6e-52 210.3 205 54.6
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.8e-52 209.5 336 41.4
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 3.7e-52 209.1 275 45.5
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 4.8e-52 208.8 279 45.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 4.8e-52 208.8 236 47.9
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 6.3e-52 208.4 187 56.1
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 6.3e-52 208.4 275 43.3
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 6.3e-52 208.4 274 45.6
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.1e-51 207.6 254 45.7
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.4e-51 207.2 227 48.9
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.4e-51 207.2 227 49.3
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.8e-51 206.8 279 42.3
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 3.1e-51 206.1 189 55.0
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 4.1e-51 205.7 266 44.4
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 4.1e-51 205.7 274 44.9
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 4.1e-51 205.7 266 44.4
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 5.3e-51 205.3 189 54.0
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.5e-50 203.8 279 43.0
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.5e-50 203.8 283 41.0
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 2.6e-50 203.0 256 45.3
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.6e-50 203.0 189 54.5
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 5.9e-50 201.8 191 53.4
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.0e-49 201.1 277 42.6
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 8.5e-49 198.0 189 51.9
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.1e-48 197.6 187 52.4
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.5e-48 196.4 227 48.0
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.5e-48 196.4 187 52.9
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 9.4e-48 194.5 197 51.3
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.6e-47 193.7 187 51.9
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.6e-47 193.7 195 53.3
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 6.1e-47 191.8 187 51.3
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 1.8e-46 190.3 189 50.8
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 1.1e-45 187.6 189 50.8
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 3.3e-45 186.0 189 49.7
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 3.3e-45 186.0 188 51.6
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 4.3e-45 185.7 248 44.4
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 4.3e-45 185.7 281 40.2
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.3e-44 184.1 189 50.3
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 2.2e-44 183.3 189 48.7
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 3.7e-44 182.6 193 52.8
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.0e-42 176.8 177 50.8
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.3e-41 174.1 274 40.1
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.4e-40 170.6 217 43.3
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 3.0e-38 162.9 188 47.9
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.3e-29 132.9 135 51.1
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 2.8e-28 129.8 249 35.7
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 7.7e-26 121.7 73 74.0
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 1.3e-25 120.9 182 40.7
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.0e-22 109.4 67 73.1
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 3.4e-21 106.3 182 36.8
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 3.5e-18 96.3 133 43.6
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.5e-18 96.3 136 45.6
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 5.5e-16 89.0 216 29.6
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 3.6e-15 86.3 50 74.0
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 1.8e-11 73.9 177 29.9
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.6e-09 65.5 77 42.9
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 1.5e-08 64.3 39 71.8
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.9e-08 63.9 52 57.7
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.9e-08 63.9 185 26.5
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 2.1e-07 60.5 71 43.7
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 2.8e-07 60.1 39 61.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 4.0e-06 56.2 66 47.0


User provided reference genes

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