Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 9.2e-49 196.4 90 100.0
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 9.2e-25 116.7 60 93.3
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.7e-23 112.5 60 88.3
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.7e-23 112.5 60 88.3
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.7e-23 112.5 60 88.3
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.6e-22 107.5 57 86.0
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 3.6e-21 104.8 60 81.7
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 6.2e-21 104.0 58 81.0
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.4e-20 102.8 60 75.0
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.8e-20 102.4 60 78.3
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.8e-20 102.4 56 83.9
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 4.0e-20 101.3 60 76.7
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 5.2e-20 100.9 60 76.7
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 5.2e-20 100.9 60 70.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 6.8e-20 100.5 58 75.9
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.5e-19 99.4 60 76.7
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.5e-19 99.4 60 76.7
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.5e-19 99.4 60 76.7
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.5e-19 99.4 56 80.4
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.5e-19 99.4 60 75.0
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 2.0e-19 99.0 60 73.3
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 2.6e-19 98.6 58 75.9
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.6e-19 98.6 56 80.4
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 4.4e-19 97.8 56 80.4
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 4.4e-19 97.8 60 75.0
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 5.8e-19 97.4 56 78.6
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.8e-19 97.4 56 78.6
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.8e-19 97.4 56 78.6
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 5.8e-19 97.4 56 80.4
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 7.6e-19 97.1 54 79.6
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 7.6e-19 97.1 60 75.0
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 9.9e-19 96.7 56 76.8
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 9.9e-19 96.7 56 78.6
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 9.9e-19 96.7 60 73.3
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 9.9e-19 96.7 56 73.2
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 9.9e-19 96.7 57 77.2
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 9.9e-19 96.7 54 79.6
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 1.3e-18 96.3 60 68.3
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.3e-18 96.3 56 78.6
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.3e-18 96.3 56 75.0
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.3e-18 96.3 60 73.3
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.3e-18 96.3 60 71.7
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.3e-18 96.3 56 76.8
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 2.9e-18 95.1 60 71.7
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 2.9e-18 95.1 56 75.0
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.9e-18 95.1 56 75.0
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 2.9e-18 95.1 60 71.7
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 3.8e-18 94.7 59 72.9
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.9e-18 94.4 57 71.9
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 4.9e-18 94.4 58 70.7
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 4.9e-18 94.4 56 75.0
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 6.4e-18 94.0 56 73.2
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 8.4e-18 93.6 56 73.2
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 8.4e-18 93.6 56 73.2
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 8.4e-18 93.6 56 73.2
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.4e-18 93.6 56 76.8
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.1e-17 93.2 56 71.4
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.1e-17 93.2 56 75.0
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.1e-17 93.2 60 71.7
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.1e-17 93.2 60 70.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 1.4e-17 92.8 59 71.2
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 1.4e-17 92.8 56 75.0
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.4e-17 92.8 56 73.2
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 1.9e-17 92.4 56 73.2
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.4e-17 92.0 60 68.3
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.4e-17 92.0 60 68.3
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 2.4e-17 92.0 60 68.3
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.4e-17 92.0 58 69.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 2.4e-17 92.0 56 75.0
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.4e-17 92.0 56 75.0
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.4e-17 92.0 56 75.0
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.2e-17 91.7 60 66.7
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 3.2e-17 91.7 60 70.0
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 3.2e-17 91.7 56 73.2
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 4.2e-17 91.3 56 73.2
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.2e-17 91.3 56 71.4
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.4e-17 90.9 56 69.6
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.4e-17 90.9 56 69.6
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 5.4e-17 90.9 61 72.1
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 9.2e-17 90.1 55 74.5
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 9.2e-17 90.1 56 71.4
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 9.2e-17 90.1 56 75.0
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 9.2e-17 90.1 56 71.4
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 9.2e-17 90.1 56 73.2
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 9.2e-17 90.1 56 73.2
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.2e-16 89.7 56 71.4
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.2e-16 89.7 58 69.0
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.2e-16 89.7 58 67.2
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.6e-16 89.4 56 71.4
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.6e-16 89.4 60 68.3
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.6e-16 89.4 60 68.3
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.1e-16 89.0 50 78.0
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.1e-16 89.0 58 67.2
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 2.7e-16 88.6 56 69.6
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.7e-16 88.6 56 69.6
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 2.7e-16 88.6 56 69.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.7e-16 88.6 56 71.4
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 2.7e-16 88.6 56 69.6
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 2.7e-16 88.6 56 71.4
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 4.6e-16 87.8 56 73.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 4.6e-16 87.8 56 73.2
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 4.6e-16 87.8 56 73.2
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 4.6e-16 87.8 56 73.2
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 6.0e-16 87.4 56 69.6
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 6.0e-16 87.4 54 68.5
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 7.8e-16 87.0 57 68.4
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 7.8e-16 87.0 52 75.0
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.0e-15 86.7 55 70.9
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.0e-15 86.7 56 67.9
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.0e-15 86.7 56 67.9
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.0e-15 86.7 56 67.9
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.0e-15 86.7 56 67.9
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.0e-15 86.7 54 68.5
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.0e-15 86.7 56 69.6
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.0e-15 86.7 60 65.0
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.3e-15 86.3 60 63.3
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.3e-15 85.5 60 63.3
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.3e-15 85.5 56 67.9
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.3e-15 85.5 56 67.9
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 3.0e-15 85.1 56 66.1
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 3.0e-15 85.1 56 66.1
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.0e-15 85.1 56 71.4
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 3.0e-15 85.1 54 68.5
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 3.0e-15 85.1 60 60.0
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 3.0e-15 85.1 56 67.9
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 3.9e-15 84.7 56 64.3
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 5.1e-15 84.3 59 61.0
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.7e-15 83.6 48 79.2
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.5e-14 82.8 56 66.1
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.9e-14 82.4 56 64.3
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 7.3e-14 80.5 56 64.3
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 9.6e-14 80.1 55 61.8
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 9.6e-14 80.1 61 63.9
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.6e-13 79.3 56 60.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.8e-13 78.6 54 66.7
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.8e-12 75.9 54 61.1
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 3.1e-12 75.1 54 66.7
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 3.1e-12 75.1 54 66.7
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.6e-11 72.0 56 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 2.9e-10 68.6 57 50.9
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 4.9e-10 67.8 55 58.2
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 6.4e-10 67.4 54 55.6
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.4e-09 66.2 58 46.6
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 3.2e-09 65.1 53 58.5
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 4.6e-08 61.2 44 63.6
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 3.9e-07 58.2 54 42.6
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 9.6e-06 53.5 57 38.6


User provided reference genes

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