Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0420821 Rosa chinensis HOM05D004181 ORTHO05D005610 3.4e-98 361.7 186 100.0
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 7.4e-61 237.7 134 91.0
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 9.1e-59 230.7 136 86.8
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 2.6e-58 229.2 134 87.3
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.7e-58 227.6 134 86.6
FAN22G0275 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.0e-57 227.3 134 86.6
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 1.7e-57 226.5 134 85.8
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 5.0e-57 224.9 134 85.8
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 2.1e-55 219.5 134 83.6
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 2.7e-55 219.2 134 82.8
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 1.3e-52 210.3 134 79.9
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 6.3e-52 208.0 134 75.4
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 4.1e-51 205.3 134 76.1
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 1.2e-50 203.8 134 73.9
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 4.5e-50 201.8 134 75.4
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 1.7e-49 199.9 134 71.6
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 1.1e-48 197.2 134 72.4
Cpa.g.sc16.105 Carica papaya HOM05D004181 ORTHO05D005610 1.9e-48 196.4 134 71.6
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 2.5e-48 196.1 134 71.6
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 3.2e-48 195.7 136 69.1
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 3.2e-48 195.7 134 72.4
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 7.2e-48 194.5 134 70.1
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 9.4e-48 194.1 134 70.1
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 1.6e-47 193.4 134 71.6
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 2.1e-47 193.0 150 63.3
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 2.1e-47 193.0 134 70.1
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 1.0e-46 190.7 151 61.6
ClCG05G005760 Citrullus lanatus HOM05D004181 ORTHO05D005610 1.8e-46 189.9 151 62.3
COL.COLO4_13939 Corchorus olitorius HOM05D004181 ORTHO05D005610 1.8e-46 189.9 134 70.9
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 1.8e-46 189.9 151 62.3
vmacro08213 Vaccinium macrocarpon HOM05D004181 ORTHO05D005610 1.8e-46 189.9 136 68.4
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 2.3e-46 189.5 134 70.1
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 2.3e-46 189.5 134 68.7
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 3.9e-46 188.7 134 67.2
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 5.2e-46 188.3 151 60.3
MELO3C006602.2 Cucumis melo HOM05D004181 ORTHO05D005610 5.2e-46 188.3 151 61.6
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 5.2e-46 188.3 134 69.4
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 5.2e-46 188.3 134 69.4
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 6.7e-46 188.0 134 67.2
SGA_v2.0_scaffold89G27558 Striga asiatica HOM05D004181 ORTHO05D005610 6.7e-46 188.0 138 65.2
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 1.1e-45 187.2 134 67.2
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 1.1e-45 187.2 151 60.9
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 1.1e-45 187.2 134 67.2
GSVIVG01017819001 Vitis vinifera HOM05D004181 ORTHO05D005610 1.1e-45 187.2 132 68.2
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 1.5e-45 186.8 134 66.4
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 1.5e-45 186.8 134 67.2
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 2.0e-45 186.4 134 67.9
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 2.6e-45 186.0 134 66.4
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 3.3e-45 185.7 134 68.7
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 3.3e-45 185.7 134 71.6
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 3.3e-45 185.7 134 67.2
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 3.3e-45 185.7 180 55.6
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 4.4e-45 185.3 151 58.9
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 5.7e-45 184.9 134 68.7
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 5.7e-45 184.9 134 67.2
SalBow5G0241 Salvia bowleyana HOM05D004181 ORTHO05D005610 7.4e-45 184.5 128 68.8
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 9.7e-45 184.1 136 64.7
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 9.7e-45 184.1 134 64.9
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 9.7e-45 184.1 134 66.4
Peaxi162Scf00075g01553 Petunia axillaris HOM05D004181 ORTHO05D005610 1.3e-44 183.7 134 67.9
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 1.3e-44 183.7 134 66.4
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 1.7e-44 183.3 134 67.9
Nitab4.5_0000242g0080 Nicotiana tabacum HOM05D004181 ORTHO05D005610 1.7e-44 183.3 176 55.7
Nitab4.5_0003641g0020 Nicotiana tabacum HOM05D004181 ORTHO05D005610 1.7e-44 183.3 176 54.0
SalBow5G5345 Salvia bowleyana HOM05D004181 ORTHO05D005610 1.7e-44 183.3 128 68.0
Sopen08g004800 Solanum pennellii HOM05D004181 ORTHO05D005610 1.7e-44 183.3 134 66.4
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 2.2e-44 183.0 134 67.9
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 4.8e-44 181.8 134 65.7
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 4.8e-44 181.8 134 67.9
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 6.3e-44 181.4 134 64.9
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 6.3e-44 181.4 134 65.7
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 1.4e-43 180.3 180 53.9
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.4e-43 180.3 134 66.4
Gohir.A10G101825 Gossypium hirsutum HOM05D004181 ORTHO05D005610 4.1e-43 178.7 133 66.9
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 3.5e-42 175.6 134 65.7
CDE12G0304 Ceratophyllum demersum HOM05D004181 ORTHO05D005610 3.5e-42 175.6 141 62.4
Lalb_Chr15g0087081 Lupinus albus HOM05D004181 ORTHO05D005610 1.0e-41 174.1 136 64.7
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 3.8e-41 172.2 134 61.2
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 8.5e-41 171.0 151 57.0
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 1.1e-40 170.6 134 64.2
Atru.chr4.2742 Acer truncatum HOM05D004181 ORTHO05D005610 1.5e-40 170.2 114 72.8
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 2.7e-39 166.0 116 69.8
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 6.1e-39 164.9 136 59.6
SHI00295 Sapria himalayana HOM05D004181 ORTHO05D005610 1.4e-38 163.7 134 59.7
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 4.0e-38 162.2 139 58.3
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 5.2e-38 161.8 135 57.0
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 3.3e-37 159.1 135 56.3
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 3.3e-37 159.1 135 56.3
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 7.5e-37 157.9 137 57.7
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 1.3e-36 157.1 135 54.1
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 1.3e-36 157.1 135 54.1
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 1.3e-36 157.1 135 54.1
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 1.7e-36 156.8 135 55.6
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 2.2e-36 156.4 135 54.1
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 2.2e-36 156.4 135 54.1
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 2.2e-36 156.4 135 54.8
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 2.2e-36 156.4 135 55.6
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 2.8e-36 156.0 137 56.2
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 4.8e-36 155.2 137 56.2
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 8.3e-36 154.5 135 54.1
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 8.3e-36 154.5 135 53.3
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 8.3e-36 154.5 135 54.1
CiPaw.02G087200 Carya illinoinensis HOM05D004181 ORTHO05D005610 3.1e-35 152.5 122 60.7
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 2.0e-34 149.8 135 52.6
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 3.5e-34 149.1 135 52.6
SEGI_19119 Sequoiadendron giganteum HOM05D004181 ORTHO05D005610 5.9e-34 148.3 155 49.7
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 2.1e-31 139.8 167 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2942 Anthoceros agrestis HOM05D004181 ORTHO05D005610 3.0e-30 136.0 147 49.7
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 5.2e-30 135.2 146 46.6
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 1.5e-29 133.7 148 46.6
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 3.4e-29 132.5 118 54.2
Lsat_1_v5_gn_6_15980 Lactuca sativa HOM05D004181 ORTHO05D005610 2.2e-28 129.8 120 53.3
DCAR_024617 Daucus carota HOM05D004181 ORTHO05D005610 3.7e-28 129.0 115 53.0
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 1.6e-26 123.6 135 48.1
A06p07140 Brassica napus HOM05D004181 ORTHO05D021060 2.0e-26 123.2 177 42.9
A06p07190 Brassica napus HOM05D004181 ORTHO05D021060 2.0e-26 123.2 177 42.9
SGA_v2.0_scaffold299G47726 Striga asiatica HOM05D004181 ORTHO05D005610 3.5e-26 122.5 111 56.8
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 5.9e-26 121.7 117 50.4
A06p07240 Brassica napus HOM05D004181 ORTHO05D021060 1.1e-24 117.5 146 45.9
Sabra10G0031300 Salix brachista HOM05D007701 ORTHO05D006440 1.2e-23 114.0 86 65.1
CBR_g38144 Chara braunii HOM05D004181 ORTHO05D005610 1.4e-19 100.5 203 30.5
Gohir.A02G045701 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.8e-19 100.1 78 64.1
Cre14.g612000 Chlamydomonas reinhardtii HOM05D004181 ORTHO05D005610 3.3e-08 62.8 142 29.6
Sc13g0003660 Simmondsia chinensis HOM05D004181 ORTHO05D005610 4.7e-07 58.9 41 65.9


User provided reference genes

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