Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0420561 Rosa chinensis HOM05D009091 ORTHO05D003768 1.1e-122 443.4 236 100.0
RcHm_v2.0_Chr1g0315701 Rosa chinensis HOM05D009091 ORTHO05D003768 2.5e-85 319.3 219 83.6
FvH4_6g35541 Fragaria vesca HOM05D009091 ORTHO05D003768 1.3e-73 280.4 241 66.0
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 2.5e-69 266.2 241 64.3
RcHm_v2.0_Chr1g0357501 Rosa chinensis HOM05D009091 ORTHO05D003768 1.5e-58 230.3 136 91.9
FvH4_5g18423 Fragaria vesca HOM05D009091 ORTHO05D000062 1.8e-51 206.8 241 53.5
FvH4_4g10040 Fragaria vesca HOM05D009091 ORTHO05D003768 5.9e-47 191.8 189 61.4
FAN08G3223 Fragaria x ananassa HOM05D009091 ORTHO05D003768 5.9e-47 191.8 145 71.0
RcHm_v2.0_Chr2g0134701 Rosa chinensis HOM05D009091 ORTHO05D003768 1.2e-44 184.1 251 49.0
FAN22G1616 Fragaria x ananassa HOM05D009091 ORTHO05D003768 3.6e-44 182.6 140 70.7
RcHm_v2.0_Chr4g0433611 Rosa chinensis HOM05D009091 ORTHO05D003768 1.7e-41 173.7 248 47.6
RcHm_v2.0_Chr3g0496631 Rosa chinensis HOM05D009091 ORTHO05D003768 1.5e-37 160.6 87 96.6
RcHm_v2.0_Chr7g0231331 Rosa chinensis HOM05D009091 ORTHO05D003768 1.0e-35 154.5 112 77.7
FvH4_3g45091 Fragaria vesca HOM05D009091 ORTHO05D003768 3.7e-33 146.0 141 60.3
RcHm_v2.0_Chr3g0496641 Rosa chinensis HOM05D009091 ORTHO05D003768 5.6e-29 132.1 73 97.3
Oeu029662.1 Olea europaea HOM05D009091 ORTHO05D003768 1.4e-16 90.9 134 41.8
CSS0010964 Camellia sinensis var. sinensis HOM05D008321 ORTHO05D003768 2.4e-16 90.1 201 33.8
RcHm_v2.0_Chr2g0133581 Rosa chinensis HOM05D020182 ORTHO05D010380 3.3e-13 79.7 73 60.3
CSS0049472 Camellia sinensis var. sinensis HOM05D008321 ORTHO05D003768 5.6e-13 79.0 214 32.7
Sed0011740 Sechium edule HOM05D007314 ORTHO05D003768 1.6e-12 77.4 149 36.2
Sed0001060 Sechium edule HOM05D007314 ORTHO05D003768 8.1e-12 75.1 192 32.8
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 1.1e-11 74.7 224 29.0
CSS0038469 Camellia sinensis var. sinensis HOM05D008321 ORTHO05D003768 1.4e-11 74.3 151 35.1
MELO3C031887.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.2e-10 71.2 166 33.1
RcHm_v2.0_Chr3g0460621 Rosa chinensis HOM05D007314 ORTHO05D003768 2.0e-10 70.5 179 30.7
Oeu048290.1 Olea europaea HOM05D009091 ORTHO05D003768 4.4e-10 69.3 144 33.3
Rhsim03G0123400 Rhododendron simsii HOM05D007314 ORTHO05D010380 6.4e-09 65.5 170 27.1
RcHm_v2.0_Chr3g0458231 Rosa chinensis HOM05D007314 ORTHO05D003768 8.4e-09 65.1 186 27.4
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 1.4e-08 64.3 156 31.4
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 4.1e-08 62.8 175 30.9
Sc11g0006850 Simmondsia chinensis HOM05D001309 ORTHO05D000385 5.4e-08 62.4 194 27.3
CSS0021689 Camellia sinensis var. sinensis HOM05D008321 ORTHO05D003768 7.1e-08 62.0 202 31.2
FvH4_1g29233 Fragaria vesca HOM05D008321 ORTHO05D003768 7.1e-08 62.0 164 29.3
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 9.2e-08 61.6 167 30.5
Oeu050751.1 Olea europaea HOM05D009091 ORTHO05D003768 1.2e-07 61.2 154 30.5
Oeu005258.1 Olea europaea HOM05D009091 ORTHO05D003768 3.5e-07 59.7 74 40.5
PSO339G2614 Papaver somniferum HOM05D008526 ORTHO05D010380 7.8e-07 58.5 138 26.1
MBI13_g31587_MAGBIO Magnolia biondii HOM05D009042 ORTHO05D003170 1.0e-06 58.2 155 27.7
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 1.3e-06 57.8 204 29.4
FAN08G2819 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.3e-06 57.0 135 32.6
PSO339G6242 Papaver somniferum HOM05D008526 ORTHO05D010380 3.0e-06 56.6 205 26.8
RcHm_v2.0_Chr5g0033771 Rosa chinensis HOM05D020182 ORTHO05D003768 3.0e-06 56.6 49 63.3
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 6.6e-06 55.5 146 32.2
Atru.chr7.467 Acer truncatum HOM05D000107 ORTHO05D000062 8.6e-06 55.1 67 40.3
MBI05_g09172_MAGBIO Magnolia biondii HOM05D009042 ORTHO05D003170 8.6e-06 55.1 162 27.8


User provided reference genes

Program Settings