Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 4.9e-57 224.2 107 100.0
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.5e-55 218.0 107 97.2
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.5e-55 218.0 107 97.2
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 7.8e-55 216.9 107 96.3
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.8e-55 216.9 107 96.3
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.8e-55 216.9 107 96.3
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.8e-55 216.9 107 97.2
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.6e-52 209.1 105 92.4
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.1e-52 208.8 105 93.3
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 2.8e-52 208.4 105 93.3
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 8.1e-52 206.8 105 91.4
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 2.6e-50 201.8 105 90.5
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 8.3e-49 196.8 107 85.0
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 1.9e-48 195.7 107 86.0
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 86.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 4.1e-48 194.5 107 86.0
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 7.1e-48 193.7 107 84.1
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 7.1e-48 193.7 107 85.0
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 82.2
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.0e-46 189.9 107 82.2
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.0e-46 189.9 107 82.2
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 3.0e-46 188.3 107 81.3
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 3.9e-46 188.0 107 80.4
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 82.2
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 80.4
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 8.6e-46 186.8 105 84.8
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 81.0
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 81.3
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 81.3
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 81.3
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 81.3
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 80.4
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 80.4
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 81.3
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 81.3
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 79.4
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 81.3
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 80.4
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 81.3
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 80.4
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 3.3e-45 184.9 106 82.1
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.3e-45 184.9 106 82.1
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 80.4
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 4.3e-45 184.5 104 82.7
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 4.3e-45 184.5 105 82.9
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 79.4
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 79.4
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 5.6e-45 184.1 107 80.4
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 7.3e-45 183.7 107 80.4
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 7.3e-45 183.7 105 81.9
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 7.3e-45 183.7 107 79.4
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 9.5e-45 183.3 106 80.2
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.2e-44 183.0 106 81.1
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 1.2e-44 183.0 107 78.5
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.6e-44 182.6 105 81.0
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.6e-44 182.6 105 81.0
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.6e-44 182.6 107 79.4
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.6e-44 182.6 106 79.2
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 2.1e-44 182.2 105 80.0
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.1e-44 182.2 103 82.5
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 2.1e-44 182.2 105 79.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 2.8e-44 181.8 105 79.0
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 78.5
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.6e-44 181.4 104 78.8
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 77.6
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 4.7e-44 181.0 104 77.9
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 4.7e-44 181.0 104 77.9
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 4.7e-44 181.0 105 80.0
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 6.2e-44 180.6 104 76.9
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.1e-44 180.3 103 81.6
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 8.1e-44 180.3 107 75.7
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 8.1e-44 180.3 105 81.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 78.5
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 79.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.4e-43 179.5 105 80.0
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.4e-43 179.5 107 75.7
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 80.0
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.4e-43 178.7 101 83.2
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.4e-43 178.7 101 83.2
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 79.0
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.0e-43 177.9 105 79.0
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 4.0e-43 177.9 105 76.2
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 4.0e-43 177.9 107 75.7
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 4.0e-43 177.9 107 75.7
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.0e-43 177.9 106 78.3
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 76.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 76.0
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.0
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 8.9e-43 176.8 107 74.8
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 77.9
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.5e-42 176.0 107 75.7
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.0e-42 175.6 98 80.6
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.0e-42 175.6 109 76.1
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.6e-42 175.3 107 74.8
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 2.6e-42 175.3 104 75.0
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 76.2
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.4e-42 174.9 103 74.8
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 4.4e-42 174.5 104 75.0
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 78.5
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 74.8
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 9.9e-42 173.3 107 74.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 1.3e-41 172.9 98 78.6
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 73.3
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 73.8
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 73.8
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 73.8
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.2e-41 172.2 110 76.4
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 4.9e-41 171.0 104 73.1
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 6.4e-41 170.6 105 75.2
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 6.4e-41 170.6 98 77.6
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 6.4e-41 170.6 107 72.9
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 72.9
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 72.0
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 72.0
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 5.4e-40 167.5 104 71.2
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.4e-40 167.5 108 74.1
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.1e-40 167.2 107 71.0
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 70.1
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 72.9
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 3.5e-39 164.9 110 69.1
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 6.0e-39 164.1 103 70.9
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 7.8e-39 163.7 107 72.0
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 7.8e-39 163.7 105 68.6
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.0e-38 163.3 104 73.1
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.7e-38 162.5 104 72.1
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 2.3e-38 162.2 105 71.4
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 8.6e-38 160.2 105 68.6
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 5.6e-37 157.5 105 66.7
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 7.3e-37 157.1 88 77.3
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 7.3e-37 157.1 86 79.1
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.6e-36 156.0 169 50.9
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 3.6e-36 154.8 106 65.1
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 9.0e-35 150.2 82 86.6
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 3.4e-34 148.3 106 64.2
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.6e-31 139.4 78 75.6
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 6.0e-31 137.5 106 63.2
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.0e-30 135.2 80 78.8
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.1e-29 133.3 95 61.1
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.3e-29 131.7 102 59.8
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 5.6e-29 131.0 100 61.0
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 3.6e-28 128.3 72 75.0
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 6.2e-28 127.5 103 58.3
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 8.1e-28 127.1 65 84.6
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 2.6e-26 122.1 82 65.9
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 5.4e-24 114.4 95 49.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.7e-23 112.1 73 71.2
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.9e-21 105.9 67 73.1
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 4.3e-21 104.8 63 76.2
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 7.4e-21 104.0 71 66.2
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.6e-20 102.8 92 46.7
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 1.8e-19 99.4 59 79.7
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.8e-19 99.4 63 76.2
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 9.0e-19 97.1 69 66.7
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 5.8e-18 94.4 54 77.8
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 1.3e-17 93.2 60 71.7
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 1.7e-17 92.8 63 69.8
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.9e-17 92.0 106 48.1
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 4.9e-17 91.3 92 42.4
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 7.1e-16 87.4 51 76.5
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 7.1e-16 87.4 55 72.7
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.2e-15 86.7 55 69.1
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 8.7e-14 80.5 45 75.6
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 5.6e-13 77.8 102 44.1
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 4.0e-11 71.6 44 70.5


User provided reference genes

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