Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 1.2e-123 446.4 220 100.0
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 4.4e-121 438.0 220 98.2
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 3.7e-120 434.9 220 97.3
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 6.4e-120 434.1 220 96.8
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 3.0e-117 425.2 213 97.2
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 2.0e-113 412.5 219 92.2
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 2.9e-112 408.7 219 91.3
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 2.4e-106 389.0 219 86.3
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 6.8e-106 387.5 217 85.3
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 3.8e-104 381.7 217 85.3
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 8.4e-104 380.6 217 85.3
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 8.7e-101 370.5 216 82.9
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 1.9e-100 369.4 215 83.3
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 2.5e-100 369.0 217 80.2
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 3.3e-100 368.6 217 80.6
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 4.3e-100 368.2 214 82.7
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 4.3e-100 368.2 217 81.6
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 2.1e-99 365.9 213 83.6
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 6.2e-99 364.4 217 79.7
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 1.8e-98 362.8 217 81.6
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 3.1e-98 362.1 221 80.1
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 3.1e-98 362.1 221 80.1
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 4.0e-98 361.7 214 82.7
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 4.0e-98 361.7 216 81.0
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 4.0e-98 361.7 212 80.2
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 4.0e-98 361.7 215 82.3
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 5.3e-98 361.3 212 82.5
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 6.9e-98 360.9 217 80.2
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 9.0e-98 360.5 217 80.2
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 1.2e-97 360.1 217 79.7
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 1.2e-97 360.1 214 80.8
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.5e-97 359.8 217 79.7
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.0e-97 359.4 217 80.2
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 2.0e-97 359.4 217 80.2
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 2.6e-97 359.0 217 80.6
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 2.6e-97 359.0 217 78.8
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 3.4e-97 358.6 216 80.6
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 3.4e-97 358.6 217 80.2
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 3.4e-97 358.6 214 80.8
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 4.4e-97 358.2 213 80.3
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 4.4e-97 358.2 215 80.5
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 2.2e-96 355.9 214 79.0
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 2.9e-96 355.5 232 75.4
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 4.9e-96 354.8 213 79.3
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 6.4e-96 354.4 215 78.1
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 6.4e-96 354.4 215 78.1
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 8.4e-96 354.0 217 78.3
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 1.9e-95 352.8 213 77.5
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 3.2e-95 352.1 215 77.7
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 7.1e-95 350.9 215 77.7
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 7.1e-95 350.9 215 79.1
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 9.3e-95 350.5 216 78.7
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 1.2e-94 350.1 218 78.4
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 1.2e-94 350.1 216 78.2
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 1.6e-94 349.7 218 78.4
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 2.1e-94 349.4 217 78.3
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 1.0e-93 347.1 212 80.2
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 1.0e-93 347.1 212 80.2
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.3e-93 346.7 212 78.3
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 1.3e-93 346.7 216 76.9
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 2.3e-93 345.9 216 77.8
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 3.9e-93 345.1 215 78.1
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 8.7e-93 344.0 216 76.4
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 2.5e-92 342.4 209 78.5
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 2.5e-92 342.4 213 77.5
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 3.3e-92 342.0 213 78.9
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 3.3e-92 342.0 210 80.0
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 5.6e-92 341.3 214 75.2
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 1.3e-91 340.1 213 78.4
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 1.6e-91 339.7 215 78.1
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 1.6e-91 339.7 213 77.5
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 2.1e-91 339.3 215 77.2
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 2.8e-91 339.0 202 80.2
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 6.2e-91 337.8 209 76.1
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 8.1e-91 337.4 215 77.7
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 1.4e-90 336.7 213 77.0
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 1.4e-90 336.7 213 77.0
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 2.4e-90 335.9 218 77.1
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 3.1e-90 335.5 215 76.3
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 6.9e-90 334.3 217 76.0
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 1.2e-89 333.6 213 76.1
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 2.6e-89 332.4 213 76.1
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 2.6e-89 332.4 213 76.1
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 3.4e-89 332.0 215 76.3
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 6.4e-88 327.8 213 76.1
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 1.4e-87 326.6 216 72.2
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.6e-86 321.6 266 68.0
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 8.7e-85 317.4 201 77.1
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 9.6e-84 313.9 215 72.1
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 3.7e-83 312.0 201 75.6
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.1e-82 310.5 207 70.5
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 5.3e-82 308.1 216 69.4
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 4.5e-81 305.1 211 69.2
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 2.9e-80 302.4 217 71.4
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 6.5e-80 301.2 207 72.0
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 1.1e-79 300.4 216 68.5
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 3.2e-79 298.9 217 68.2
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 2.8e-75 285.8 193 73.6
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 4.1e-74 282.0 219 67.1
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 1.0e-72 277.3 149 89.9
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 1.1e-71 273.9 188 72.9
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 1.9e-71 273.1 192 65.6
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 2.5e-71 272.7 184 66.8
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 3.2e-71 272.3 199 66.8
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 1.8e-69 266.5 144 88.2
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 3.9e-69 265.4 188 67.0
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 2.0e-65 253.1 149 79.2
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 1.6e-62 243.4 149 79.9
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 6.1e-62 241.5 148 77.7
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.2e-57 227.3 177 59.3
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.3e-53 213.0 103 100.0
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 1.7e-48 196.8 188 49.5
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 2.0e-36 156.8 216 45.8
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 5.7e-28 128.6 97 62.9
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 9.8e-28 127.9 85 69.4
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 2.4e-26 123.2 71 81.7
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 2.7e-25 119.8 77 81.8
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 1.5e-23 114.0 87 63.2
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 2.8e-22 109.8 68 73.5
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 6.1e-22 108.6 84 59.5
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 4.4e-12 75.9 143 37.1
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 1.3e-08 64.3 41 63.4
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 3.3e-07 59.7 140 30.0
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 4.3e-07 59.3 141 28.4
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 5.6e-07 58.9 141 27.7
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 5.6e-07 58.9 141 27.7
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 9.5e-07 58.2 205 25.9
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.2e-06 57.8 141 27.7
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 1.6e-06 57.4 141 29.1
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.1e-06 57.0 141 27.0
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 2.1e-06 57.0 141 29.1
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 2.1e-06 57.0 141 29.1
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 2.1e-06 57.0 141 29.1
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 2.1e-06 57.0 130 30.8
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 3.6e-06 56.2 141 29.1
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 4.7e-06 55.8 141 29.1
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 4.7e-06 55.8 87 34.5
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 6.2e-06 55.5 142 28.2
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 6.2e-06 55.5 205 25.4
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 8.1e-06 55.1 202 25.7


User provided reference genes

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