Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1906.7 961 100.0
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1804.3 963 94.1
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1795.0 973 93.0
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1795.0 973 93.0
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1789.6 973 92.8
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1787.3 962 93.3
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1763.0 972 91.8
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1641.7 973 85.2
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1604.0 994 82.1
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1603.6 965 84.1
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1599.7 969 82.7
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1596.3 964 83.8
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1587.0 975 82.3
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1586.2 979 82.4
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1584.7 979 81.7
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1583.9 971 82.3
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1583.5 971 82.9
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1578.5 974 82.0
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1575.1 969 82.8
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1573.1 977 81.4
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1571.6 967 81.9
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1570.1 979 81.3
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1567.4 978 81.0
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1566.6 972 81.2
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1565.8 956 81.8
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1564.7 961 81.6
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1562.7 909 85.6
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1562.7 970 81.8
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1562.4 970 81.9
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 979 81.1
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1556.6 909 85.4
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1554.3 963 82.2
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1550.4 969 80.5
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1549.6 985 80.2
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1548.9 977 79.5
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1548.1 874 87.5
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1542.7 969 80.5
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1541.2 1001 78.7
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1538.1 874 87.6
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1537.3 942 82.1
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1536.5 964 80.2
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1536.5 969 80.1
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1534.6 975 80.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1533.1 960 79.7
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 974 80.0
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1528.1 961 79.5
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1527.7 889 84.6
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1526.9 870 85.7
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 970 78.8
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1523.8 964 79.3
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1522.3 976 78.1
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1521.9 961 79.2
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 857 88.4
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 978 79.2
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1516.9 891 84.3
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1514.6 891 84.8
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 844 87.9
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1508.4 967 78.4
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1507.3 902 82.7
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1506.1 857 87.5
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 966 78.3
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 955 79.1
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1498.4 895 82.1
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 978 78.1
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1494.9 873 84.2
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 957 78.4
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 940 80.4
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 958 78.2
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1490.3 874 84.0
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 967 77.6
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 923 79.8
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 873 84.2
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1488.0 879 82.8
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1487.2 934 80.4
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1486.1 923 79.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1484.9 885 82.5
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1483.8 900 81.4
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1483.0 874 83.2
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 891 81.8
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 890 82.0
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 890 82.0
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1478.0 858 84.1
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1477.2 890 81.7
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 899 81.1
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 961 77.5
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 894 81.4
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 961 77.4
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 1003 75.5
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 880 84.2
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1471.1 874 82.7
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 876 81.8
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 858 84.6
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1467.6 843 85.9
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1466.8 897 81.0
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 878 81.5
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 853 84.3
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 873 82.4
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1458.4 880 81.4
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 873 82.5
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 874 82.7
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1456.8 888 81.6
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1455.7 905 80.3
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1451.4 877 80.5
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 945 77.8
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1441.8 893 79.7
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1436.8 902 79.5
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1435.2 858 82.3
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1433.3 1095 69.6
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1411.0 844 81.4
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1407.9 951 75.6
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1406.7 962 75.5
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1397.1 866 79.8
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1394.8 872 77.2
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1391.7 877 77.2
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1391.3 883 76.1
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1383.6 879 76.9
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1379.4 882 79.1
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1357.8 874 77.9
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1355.9 877 78.4
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1352.0 774 85.4
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1347.0 823 79.7
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1343.9 902 75.4
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1341.3 803 80.8
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1333.2 803 83.1
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1303.5 885 76.8
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1297.3 880 76.9
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1268.4 751 83.9
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1261.5 875 73.8
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1223.8 730 81.9
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1204.9 779 77.3
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1195.3 874 69.8
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1185.6 857 67.6
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1182.5 875 66.7
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1094.3 633 84.0
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 2.0e-303 1045.8 883 59.5
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 4.2e-301 1038.1 581 86.1
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 4.5e-271 938.3 636 74.8
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.0e-258 896.3 908 53.6
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.1e-214 748.8 538 72.3
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.1e-211 741.1 504 75.8
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.4e-211 740.0 519 74.0
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.9e-191 671.8 450 76.2
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 2.0e-186 657.1 422 78.7
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 4.2e-184 649.4 744 49.2
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.3e-161 574.7 471 63.7
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.1e-160 571.6 338 84.3
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.6e-135 488.0 296 80.7
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 6.8e-134 482.6 391 63.2
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.6e-112 409.8 423 54.1
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 5.8e-101 373.2 318 61.9
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 5.5e-91 340.1 232 73.7
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 1.4e-86 325.5 280 61.8
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 3.0e-65 254.6 227 61.7
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 4.1e-62 244.2 216 58.8
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 2.8e-55 221.5 151 72.8
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 2.6e-48 198.4 119 78.2
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 8.9e-41 173.3 268 41.8
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.0e-37 162.2 112 71.4
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.0e-33 149.8 85 83.5
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 5.4e-30 137.5 83 78.3
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 8.6e-28 130.2 90 67.8
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.9e-27 129.0 81 79.0
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 3.4e-24 118.2 452 27.4
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.9e-23 115.2 130 53.1
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-22 113.2 95 63.2
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 2.1e-18 99.0 56 78.6
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 2.9e-15 88.6 60 65.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 5.1e-12 77.8 44 84.1
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.5e-11 75.5 49 75.5
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-11 74.7 46 78.3
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 2.4e-09 68.9 145 33.1
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 3.1e-09 68.6 43 74.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 2.0e-08 65.9 140 35.0
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 5.8e-08 64.3 43 69.8
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 3.8e-07 61.6 56 60.7


User provided reference genes

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