Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0420021 Rosa chinensis HOM05D002804 ORTHO05D003755 5.5e-101 370.9 182 100.0
RcHm_v2.0_Chr4g0419921 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-92 342.8 172 98.3
RcHm_v2.0_Chr0c11g0499401 Rosa chinensis HOM05D002804 ORTHO05D022637 3.8e-25 119.0 173 42.2
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 6.4e-25 118.2 148 45.9
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 6.4e-25 118.2 148 45.9
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 7.1e-24 114.8 166 42.2
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 4.6e-23 112.1 156 41.0
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 4.6e-23 112.1 156 41.0
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 7.8e-23 111.3 156 41.7
FAN18G1408 Fragaria x ananassa HOM05D002804 ORTHO05D022637 4.3e-21 105.5 157 43.3
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-20 103.2 157 42.7
FvH4_5g35254 Fragaria vesca HOM05D002804 ORTHO05D022637 3.6e-20 102.4 157 42.7
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.2e-20 101.7 157 43.3
FAN13G2413 Fragaria x ananassa HOM05D002804 ORTHO05D022637 1.1e-19 100.9 146 41.1
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-19 100.5 133 44.4
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 1.8e-19 100.1 157 40.8
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 4.0e-19 99.0 154 39.6
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 4.0e-19 99.0 166 36.1
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-18 97.4 130 44.6
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-18 97.1 148 40.5
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.4e-18 95.9 127 44.1
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.4e-18 95.9 127 44.1
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 3.4e-18 95.9 156 39.7
RcHm_v2.0_Chr7g0218381 Rosa chinensis HOM05D002804 ORTHO05D003755 5.8e-18 95.1 130 40.0
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 7.6e-18 94.7 168 38.1
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 7.6e-18 94.7 131 42.7
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.9e-18 94.4 130 43.8
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.9e-18 94.4 130 43.8
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 1.7e-17 93.6 130 43.8
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.9e-17 92.0 118 44.1
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 8.4e-17 91.3 163 33.7
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-16 90.5 149 40.3
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 5.4e-16 88.6 170 37.6
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 5.4e-16 88.6 126 42.1
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-15 87.4 142 38.7
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-15 86.7 147 37.4
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-15 86.7 145 38.6
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-15 86.7 126 41.3
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.5e-15 85.9 157 40.1
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 6.0e-15 85.1 128 40.6
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 1.0e-14 84.3 103 48.5
FvH4_5g34950 Fragaria vesca HOM05D002804 ORTHO05D003755 1.3e-14 84.0 152 34.2
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 1.8e-14 83.6 146 32.9
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 3.0e-14 82.8 126 40.5
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.0e-14 82.8 123 40.7
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-14 82.8 126 41.3
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 5.1e-14 82.0 134 41.0
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 6.7e-14 81.6 152 38.2
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 6.7e-14 81.6 142 34.5
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 8.7e-14 81.3 148 34.5
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 8.7e-14 81.3 140 36.4
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-13 80.9 128 37.5
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-13 80.9 122 40.2
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 1.5e-13 80.5 128 37.5
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-13 80.5 132 37.9
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 3.3e-13 79.3 140 37.1
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 3.3e-13 79.3 140 37.1
FvH4_5g31150 Fragaria vesca HOM05D002804 ORTHO05D022637 4.3e-13 79.0 132 39.4
FAN08G1393 Fragaria x ananassa HOM05D002804 ORTHO05D029665 5.6e-13 78.6 149 37.6
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 5.6e-13 78.6 87 51.7
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 7.4e-13 78.2 128 37.5
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-12 77.4 117 37.6
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 2.1e-12 76.6 133 35.3
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 2.1e-12 76.6 155 34.2
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.8e-12 76.3 144 34.7
RcHm_v2.0_Chr7g0236041 Rosa chinensis HOM05D002804 ORTHO05D003755 2.8e-12 76.3 130 36.9
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.6e-12 75.9 131 35.9
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 3.6e-12 75.9 140 35.7
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 3.6e-12 75.9 118 39.8
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 4.8e-12 75.5 152 36.2
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 4.8e-12 75.5 118 39.8
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 8.1e-12 74.7 148 36.5
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-11 74.3 137 34.3
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-11 74.3 137 34.3
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-11 74.3 98 41.8
RcHm_v2.0_Chr3g0457771 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-11 74.3 138 34.1
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-11 74.3 118 39.0
FvH4_5g32080 Fragaria vesca HOM05D002804 ORTHO05D029665 2.4e-11 73.2 147 36.7
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 2.4e-11 73.2 148 33.1
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 2.4e-11 73.2 148 33.1
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-11 72.8 87 47.1
RcHm_v2.0_Chr7g0235931 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-11 72.8 120 41.7
FvH4_5g35330 Fragaria vesca HOM05D002804 ORTHO05D003755 4.0e-11 72.4 159 32.7
RcHm_v2.0_Chr3g0459201 Rosa chinensis HOM05D002804 ORTHO05D003755 4.0e-11 72.4 137 34.3
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.9e-11 71.6 137 32.8
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 9.0e-11 71.2 126 31.7
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 9.0e-11 71.2 148 33.1
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 1.2e-10 70.9 114 36.0
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-10 70.9 65 53.8
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 1.5e-10 70.5 106 39.6
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 1.5e-10 70.5 89 44.9
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 2.6e-10 69.7 126 39.7
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.4e-10 69.3 79 46.8
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 4.5e-10 68.9 142 31.0
FAN25G3079 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.8e-10 68.6 89 41.6
FAN18G1140 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.9e-10 67.8 109 38.5
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 9.9e-10 67.8 102 38.2
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.3e-09 67.4 119 33.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.3e-09 67.4 101 36.6
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 1.3e-09 67.4 148 34.5
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 2.2e-09 66.6 139 32.4
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 2.2e-09 66.6 103 36.9
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 2.2e-09 66.6 73 46.6
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 2.2e-09 66.6 73 46.6
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-09 66.2 160 28.8
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-09 66.2 122 34.4
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 2.9e-09 66.2 98 38.8
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 3.8e-09 65.9 136 33.1
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 3.8e-09 65.9 121 33.9
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 3.8e-09 65.9 66 51.5
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.9e-09 65.5 139 31.7
FAN13G1238 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.9e-09 65.5 101 40.6
FAN10G1025 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.4e-09 65.1 100 39.0
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.4e-09 65.1 139 31.7
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 6.4e-09 65.1 101 37.6
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 6.4e-09 65.1 103 35.9
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 6.4e-09 65.1 68 50.0
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-08 64.3 89 41.6
FAN13G1594 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-08 63.9 130 34.6
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-08 63.9 100 41.0
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 1.9e-08 63.5 89 41.6
FAN03G0147 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-08 63.5 94 40.4
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 2.4e-08 63.2 114 35.1
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 2.4e-08 63.2 90 37.8
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 2.4e-08 63.2 97 41.2
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-08 63.2 139 30.2
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 2.4e-08 63.2 122 34.4
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 4.2e-08 62.4 71 46.5
FAN08G0149 Fragaria x ananassa HOM05D002804 ORTHO05D029665 7.1e-08 61.6 123 37.4
RcHm_v2.0_Chr7g0235881 Rosa chinensis HOM05D002804 ORTHO05D003755 7.1e-08 61.6 105 36.2
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 1.2e-07 60.8 98 33.7
FvH4_5g05700 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-07 60.8 115 37.4
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-07 60.5 117 33.3
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 1.6e-07 60.5 142 31.0
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.6e-07 60.5 103 35.0
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-07 60.1 88 39.8
RcHm_v2.0_Chr7g0236631 Rosa chinensis HOM05D002804 ORTHO05D029636 2.7e-07 59.7 61 49.2
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 3.5e-07 59.3 99 35.4
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 3.5e-07 59.3 87 37.9
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 4.6e-07 58.9 105 32.4
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 6.0e-07 58.5 114 30.7
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.9e-07 58.2 104 38.5
RcHm_v2.0_Chr7g0230641 Rosa chinensis HOM05D002804 ORTHO05D003755 7.9e-07 58.2 82 42.7
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.0e-06 57.8 95 33.7
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-06 57.4 61 49.2
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 1.8e-06 57.0 101 37.6
FAN10G1430 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.9e-06 55.8 67 44.8
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 5.1e-06 55.5 141 29.8
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 5.1e-06 55.5 114 31.6
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.1e-06 55.5 96 36.5
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 5.1e-06 55.5 144 28.5
FvH4_5g32070 Fragaria vesca HOM05D002804 ORTHO05D003755 6.7e-06 55.1 96 36.5
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.7e-06 55.1 48 54.2
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 8.7e-06 54.7 115 33.0
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 8.7e-06 54.7 85 37.6
Migut.N00995 Erythranthe guttata HOM05D002804 ORTHO05D003755 8.7e-06 54.7 114 31.6
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.7e-06 54.7 104 34.6
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 8.7e-06 54.7 130 31.5


User provided reference genes

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