Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0419401 Rosa chinensis HOM05D006138 ORTHO05D007778 4.1e-53 211.1 103 100.0
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 6.2e-41 170.6 103 84.5
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 8.1e-33 143.7 102 72.5
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.4e-32 142.9 102 71.6
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 4.0e-32 141.4 102 70.6
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 6.8e-32 140.6 102 70.6
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 4.3e-26 121.3 101 61.4
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 1.1e-24 116.7 102 59.8
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.9e-21 105.9 102 58.8
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 9.9e-15 83.6 98 43.9
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 3.8e-14 81.6 104 43.3
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 2.4e-13 79.0 95 44.2
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 5.4e-13 77.8 100 42.0
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 9.3e-13 77.0 96 44.8
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 1.2e-12 76.6 102 40.2
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 6.0e-12 74.3 98 39.8
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 1.0e-11 73.6 102 38.2
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 1.3e-11 73.2 102 39.2
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 2.3e-11 72.4 98 37.8
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.0e-11 72.0 98 38.8
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 3.9e-11 71.6 99 40.4
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 5.1e-11 71.2 100 37.0
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 5.1e-11 71.2 100 37.0
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 6.6e-11 70.9 95 38.9
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 6.6e-11 70.9 98 37.8
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 8.7e-11 70.5 108 38.0
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 1.1e-10 70.1 94 41.5
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.9e-10 69.3 102 36.3
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 3.3e-10 68.6 92 43.5
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.6e-10 67.8 98 36.7
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.6e-10 67.8 98 36.7
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.6e-10 67.8 98 36.7
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 5.6e-10 67.8 98 36.7
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 7.3e-10 67.4 96 40.6
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 9.6e-10 67.0 91 40.7
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.6e-09 66.2 95 40.0
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 2.1e-09 65.9 94 38.3
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 4.8e-09 64.7 79 40.5
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 6.2e-09 64.3 90 38.9
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 1.4e-08 63.2 96 38.5
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 1.4e-08 63.2 96 38.5
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 1.8e-08 62.8 98 31.6
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 1.8e-08 62.8 102 37.3
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 3.1e-08 62.0 102 36.3
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 4.0e-08 61.6 107 41.1
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 4.0e-08 61.6 106 38.7
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 1.2e-07 60.1 95 31.6
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 2.0e-07 59.3 99 37.4
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 2.0e-07 59.3 95 34.7
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 2.6e-07 58.9 79 39.2
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 3.4e-07 58.5 94 34.0
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 3.4e-07 58.5 96 36.5
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 9.9e-07 57.0 102 34.3
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.7e-06 56.2 91 34.1
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 1.7e-06 56.2 98 34.7
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 1.7e-06 56.2 97 32.0
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 2.2e-06 55.8 91 35.2
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 2.9e-06 55.5 102 30.4
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 2.9e-06 55.5 99 38.4
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 3.8e-06 55.1 98 33.7
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 3.8e-06 55.1 96 33.3
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 4.9e-06 54.7 98 32.7
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 6.4e-06 54.3 92 37.0


User provided reference genes

Program Settings