Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 8.4e-52 206.8 112 100.0
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.0e-28 130.2 79 84.8
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 3.9e-25 118.2 82 79.3
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 3.9e-25 118.2 82 79.3
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 8.8e-25 117.1 82 78.0
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.0e-20 103.6 72 77.8
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 5.5e-19 97.8 81 70.4
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 3.6e-18 95.1 79 65.8
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 1.0e-17 93.6 81 66.7
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 4.0e-17 91.7 83 60.2
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 5.2e-17 91.3 69 71.0
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 2.6e-16 89.0 79 59.5
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 3.3e-16 88.6 85 56.5
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 4.4e-16 88.2 79 62.0
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 9.7e-16 87.0 82 63.4
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.7e-15 86.3 83 57.8
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 6.3e-15 84.3 80 56.2
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 6.3e-15 84.3 79 55.7
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 6.3e-15 84.3 71 66.2
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 1.1e-14 83.6 86 54.7
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.8e-14 82.8 79 55.7
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.4e-14 82.4 84 54.8
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 4.1e-14 81.6 81 54.3
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.1e-14 81.6 83 55.4
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 9.1e-14 80.5 66 68.2
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 9.1e-14 80.5 66 68.2
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 9.1e-14 80.5 80 62.5
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.6e-13 79.7 85 54.1
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.7e-13 79.0 69 60.9
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 2.7e-13 79.0 85 54.1
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 7.7e-13 77.4 78 56.4
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.7e-13 77.4 85 52.9
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.0e-12 77.0 83 50.6
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 1.7e-12 76.3 84 54.8
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 8.5e-12 73.9 85 50.6
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.9e-11 72.8 63 57.1
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 2.5e-11 72.4 82 56.1
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 2.5e-11 72.4 67 59.7
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 2.5e-11 72.4 67 59.7
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 5.5e-11 71.2 64 59.4
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.2e-11 70.9 83 54.2
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 7.2e-11 70.9 83 54.2
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 9.4e-11 70.5 81 51.9
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 9.4e-11 70.5 81 53.1
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.2e-10 70.1 79 51.9
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 2.7e-10 68.9 63 55.6
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 1.4e-09 66.6 81 56.8
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.8e-09 66.2 81 54.3
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.8e-09 66.2 65 55.4
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.8e-09 66.2 113 45.1
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 5.2e-09 64.7 78 50.0
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.2e-08 63.5 68 47.1
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 2.6e-08 62.4 71 50.7
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 7.5e-08 60.8 84 41.7
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 7.5e-08 60.8 49 59.2
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.3e-07 60.1 60 55.0
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.7e-07 59.7 67 49.3
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.7e-07 59.7 62 50.0
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 2.2e-07 59.3 78 42.3
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 2.2e-07 59.3 78 42.3
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 2.8e-07 58.9 65 47.7
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 3.7e-07 58.5 92 45.7
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 4.8e-07 58.2 82 47.6
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.4e-06 56.6 76 48.7
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 2.4e-06 55.8 78 46.2
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.1e-06 55.5 71 50.7
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 4.1e-06 55.1 87 43.7
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 7.0e-06 54.3 84 41.7
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 7.0e-06 54.3 77 49.4
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 9.1e-06 53.9 78 48.7
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 9.1e-06 53.9 79 44.3


User provided reference genes

Program Settings