Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 8.2e-216 753.4 380 100.0
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.8e-199 699.1 375 94.1
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 3.2e-196 688.3 394 89.6
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 5.0e-189 664.5 392 87.2
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 2.9e-181 638.6 379 83.9
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 1.0e-178 630.2 355 92.1
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 9.8e-177 623.6 378 84.1
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 2.6e-169 599.0 379 84.2
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 3.9e-165 585.1 380 79.7
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 4.0e-162 575.1 383 78.3
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 7.5e-161 570.9 381 76.4
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 9.2e-159 563.9 383 77.0
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 2.7e-158 562.4 360 80.0
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 1.7e-157 559.7 378 77.2
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.5e-156 556.6 362 79.6
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 2.5e-156 555.8 361 78.7
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 2.1e-155 552.7 360 78.1
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 3.6e-155 552.0 397 74.3
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 2.4e-154 549.3 282 98.2
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 3.1e-154 548.9 356 79.5
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 5.2e-154 548.1 361 77.3
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 1.2e-153 547.0 386 73.6
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.5e-153 546.6 361 77.0
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 5.8e-153 544.7 377 74.0
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 9.9e-153 543.9 381 74.3
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 3.8e-152 542.0 367 76.6
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 4.9e-152 541.6 382 74.3
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 2.4e-151 539.3 364 76.1
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.2e-151 538.9 380 72.9
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 4.1e-151 538.5 357 75.6
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 3.5e-150 535.4 361 73.1
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 7.8e-150 534.3 367 74.9
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 1.3e-149 533.5 372 73.1
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 1.7e-149 533.1 375 73.1
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 2.3e-149 532.7 416 68.8
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 3.9e-149 531.9 359 74.7
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 1.5e-148 530.0 375 72.8
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.6e-147 526.6 384 72.9
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 2.8e-147 525.8 383 73.1
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 6.2e-147 524.6 360 73.6
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 6.2e-147 524.6 360 75.0
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 1.1e-146 523.9 360 73.9
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.4e-146 523.5 383 72.8
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 5.2e-146 521.5 362 72.9
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 9.0e-146 520.8 362 72.7
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 4.4e-145 518.5 417 66.9
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.3e-144 516.9 361 71.7
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 1.7e-144 516.5 355 74.6
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 6.4e-144 514.6 317 81.7
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 8.4e-144 514.2 361 72.3
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.1e-143 513.8 316 80.4
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 1.4e-143 513.5 366 73.0
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 5.4e-143 511.5 326 77.3
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 2.7e-142 509.2 362 73.8
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 4.6e-142 508.4 326 77.6
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 4.6e-142 508.4 326 77.3
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 7.8e-142 507.7 369 70.7
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 7.8e-142 507.7 393 68.4
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 8.7e-141 504.2 317 77.9
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 1.9e-140 503.1 380 69.5
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 2.5e-140 502.7 326 77.6
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 9.6e-140 500.7 380 69.2
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 9.6e-140 500.7 398 66.8
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 1.3e-139 500.4 375 71.2
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 2.8e-139 499.2 370 70.5
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 4.8e-139 498.4 381 68.8
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 6.2e-139 498.0 364 69.8
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 8.1e-139 497.7 382 68.6
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.1e-138 497.3 366 67.8
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 1.4e-138 496.9 382 69.1
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 1.8e-138 496.5 387 68.0
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 3.1e-138 495.7 359 71.0
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 4.0e-138 495.4 382 68.6
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 5.3e-138 495.0 381 67.5
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 3.4e-137 492.3 380 68.2
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 5.8e-137 491.5 394 65.7
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 7.6e-137 491.1 360 70.3
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 7.6e-137 491.1 425 61.4
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 2.9e-136 489.2 311 77.8
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 8.4e-136 487.6 364 68.7
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 1.1e-135 487.3 374 68.4
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 1.1e-135 487.3 320 75.9
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 1.4e-135 486.9 362 68.0
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 2.4e-135 486.1 368 68.2
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.2e-135 485.7 318 73.3
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 4.2e-135 485.3 354 68.9
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 8.7e-133 477.6 320 74.4
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 8.7e-133 477.6 320 74.4
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 8.7e-133 477.6 292 80.1
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.9e-132 476.5 320 73.8
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 2.5e-132 476.1 319 73.7
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 2.5e-132 476.1 357 67.2
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 5.6e-132 474.9 324 75.3
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 4.8e-131 471.9 361 67.9
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 8.1e-131 471.1 315 74.9
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 9.0e-130 467.6 290 79.7
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 9.9e-129 464.2 320 70.9
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 2.2e-128 463.0 312 74.4
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.2e-126 457.2 353 69.7
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 1.0e-125 454.1 316 71.8
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.2e-121 440.7 324 71.3
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 2.0e-121 439.9 265 81.9
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.6e-121 439.5 279 81.7
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.1e-119 434.1 259 85.7
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 2.3e-117 426.4 258 82.2
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 6.3e-107 391.7 384 59.1
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.2e-105 387.5 317 61.8
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 5.0e-104 382.1 259 73.7
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 1.6e-102 377.1 302 62.6
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 1.5e-100 370.5 247 76.9
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 2.8e-99 366.3 337 55.5
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 2.8e-99 366.3 384 54.2
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 6.3e-99 365.2 374 55.6
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 7.7e-97 358.2 304 61.5
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.3e-96 357.5 304 62.5
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 1.1e-95 354.4 389 53.5
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.1e-87 327.8 194 83.0
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 8.0e-86 321.6 285 57.9
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 6.7e-85 318.5 375 49.9
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 4.4e-84 315.8 366 48.4
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.1e-79 301.2 198 78.3
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.8e-77 293.9 176 82.4
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.1e-71 274.6 189 72.0
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 5.2e-69 265.8 188 71.3
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 4.4e-68 262.7 344 39.2
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 6.3e-67 258.8 198 70.2
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 4.3e-63 246.1 165 75.8
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 9.5e-63 245.0 345 41.4
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 8.0e-62 241.9 200 64.0
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.0e-61 241.5 174 71.3
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.8e-61 240.7 171 73.1
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 5.2e-53 212.6 341 38.7
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 3.2e-50 203.4 164 64.6
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.2e-49 201.4 124 74.2
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.3e-48 198.0 168 58.9
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 5.1e-48 196.1 285 37.5
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 6.6e-48 195.7 121 75.2
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 1.5e-47 194.5 259 42.1
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 3.2e-42 176.8 377 33.2
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.4e-37 160.6 129 63.6
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 3.4e-36 156.8 164 55.5
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 9.9e-36 155.2 122 64.8
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.4e-34 150.6 319 36.4
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 1.9e-31 141.0 95 76.8
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 3.2e-26 123.6 87 71.3
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 1.7e-24 117.9 70 78.6
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 9.9e-20 102.1 87 59.8
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.1e-18 98.6 72 63.9
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.1e-14 84.3 45 91.1


User provided reference genes

Program Settings