Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 9.2e-130 466.8 227 100.0
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 4.3e-55 218.8 282 51.1
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 4.5e-44 182.2 137 71.5
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 5.9e-44 181.8 137 71.5
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.0e-43 181.0 137 70.8
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.0e-43 181.0 137 70.8
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.3e-43 180.6 137 70.8
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.0e-40 171.0 137 65.7
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 8.8e-40 167.9 137 65.0
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 8.8e-40 167.9 137 65.7
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 1.1e-39 167.5 137 65.0
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.5e-39 167.2 137 64.2
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.5e-39 167.2 137 64.2
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 2.0e-39 166.8 137 65.0
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 2.0e-39 166.8 137 64.2
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.6e-39 166.4 137 64.2
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.6e-39 166.4 137 64.2
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 2.6e-39 166.4 137 64.2
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 5.7e-39 165.2 137 64.2
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 5.7e-39 165.2 137 64.2
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 7.5e-39 164.9 137 62.8
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 7.5e-39 164.9 137 64.2
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 9.7e-39 164.5 137 63.5
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 9.7e-39 164.5 137 63.5
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 9.7e-39 164.5 137 62.8
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 9.7e-39 164.5 137 63.5
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 1.3e-38 164.1 137 62.8
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 1.3e-38 164.1 137 63.5
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 1.3e-38 164.1 137 64.2
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 1.3e-38 164.1 137 62.8
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 2.2e-38 163.3 137 62.0
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 2.2e-38 163.3 137 63.5
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 2.8e-38 162.9 137 62.8
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 2.8e-38 162.9 137 62.8
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 2.8e-38 162.9 137 62.8
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 2.8e-38 162.9 137 62.8
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 2.8e-38 162.9 137 62.0
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 3.7e-38 162.5 137 62.8
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 3.7e-38 162.5 137 62.8
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 3.7e-38 162.5 137 63.5
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 3.7e-38 162.5 137 62.0
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 3.7e-38 162.5 137 63.5
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 4.8e-38 162.2 137 62.0
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 8.2e-38 161.4 137 62.0
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 1.1e-37 161.0 137 60.6
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.1e-37 161.0 137 61.3
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 1.1e-37 161.0 137 62.0
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 1.4e-37 160.6 137 61.3
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 1.4e-37 160.6 137 61.3
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 1.4e-37 160.6 137 61.3
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.8e-37 160.2 137 61.3
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.8e-37 160.2 137 62.8
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 1.8e-37 160.2 137 61.3
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 2.4e-37 159.8 137 60.6
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 2.4e-37 159.8 137 61.3
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 2.4e-37 159.8 137 62.8
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 3.1e-37 159.5 137 60.6
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 4.1e-37 159.1 139 63.3
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 4.1e-37 159.1 134 63.4
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 4.1e-37 159.1 137 62.0
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 4.1e-37 159.1 137 60.6
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 7.0e-37 158.3 128 65.6
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 7.0e-37 158.3 139 62.6
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 7.0e-37 158.3 155 56.8
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 7.0e-37 158.3 137 62.8
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 7.0e-37 158.3 137 59.9
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 7.0e-37 158.3 137 62.0
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 9.1e-37 157.9 137 61.3
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 9.1e-37 157.9 144 60.4
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 9.1e-37 157.9 137 60.6
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 9.1e-37 157.9 137 61.3
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.2e-36 157.5 137 61.3
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.6e-36 157.1 137 59.1
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 2.0e-36 156.8 142 59.2
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 2.6e-36 156.4 137 59.1
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 3.5e-36 156.0 137 59.9
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 3.5e-36 156.0 137 60.6
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 4.5e-36 155.6 137 60.6
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 5.9e-36 155.2 137 58.4
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 5.9e-36 155.2 137 58.4
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 5.9e-36 155.2 137 58.4
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 7.7e-36 154.8 137 60.6
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.0e-35 154.5 137 60.6
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 1.0e-35 154.5 137 58.4
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.3e-35 154.1 137 57.7
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 1.3e-35 154.1 137 57.7
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 1.3e-35 154.1 137 56.9
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 1.3e-35 154.1 137 59.1
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 1.7e-35 153.7 137 59.1
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 2.2e-35 153.3 167 53.3
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 2.9e-35 152.9 137 59.9
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 2.9e-35 152.9 137 58.4
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 2.9e-35 152.9 137 56.9
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 2.9e-35 152.9 137 57.7
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 3.8e-35 152.5 137 57.7
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 6.5e-35 151.8 137 59.1
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 6.5e-35 151.8 137 57.7
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 6.5e-35 151.8 137 58.4
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 8.5e-35 151.4 137 59.1
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 1.1e-34 151.0 137 56.9
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.9e-34 150.2 137 58.4
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.2e-33 147.5 137 55.5
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.7e-33 146.4 137 54.7
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 1.1e-29 134.4 143 49.7
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 5.4e-29 132.1 113 61.9
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 2.0e-28 130.2 143 52.4
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 7.7e-28 128.3 137 53.3
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.7e-27 127.1 137 49.6
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 3.8e-27 125.9 139 48.2
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 6.5e-27 125.2 141 49.6
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 6.5e-27 125.2 137 52.6
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 1.9e-26 123.6 161 47.8
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 4.2e-26 122.5 137 50.4
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 2.6e-23 113.2 112 57.1
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 1.3e-22 110.9 137 48.9
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 4.3e-18 95.9 138 37.0
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 5.6e-18 95.5 137 40.1
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 3.6e-17 92.8 155 36.8
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 9.8e-15 84.7 131 35.1
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 1.2e-12 77.8 69 62.3
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 2.0e-12 77.0 65 58.5


User provided reference genes

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