Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 3.2e-136 488.4 249 100.0
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.4e-134 483.0 249 99.2
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 3.3e-96 355.5 249 80.3
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 4.7e-95 351.7 249 79.9
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 8.0e-95 350.9 249 79.5
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.1e-94 350.5 249 79.1
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 2.7e-90 335.9 251 75.3
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 1.2e-85 320.5 249 73.1
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 3.4e-85 318.9 251 74.1
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 2.1e-71 273.1 264 65.2
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 1.8e-70 270.0 257 63.8
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 3.1e-70 269.2 139 98.6
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 1.1e-67 260.8 256 62.9
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 3.2e-67 259.2 255 63.1
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 4.2e-67 258.8 253 63.2
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 3.5e-66 255.8 256 61.7
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 5.6e-64 248.4 264 59.1
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 1.4e-62 243.8 257 60.3
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 3.8e-60 235.7 252 56.3
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 6.4e-60 235.0 257 56.0
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 3.2e-59 232.6 252 54.8
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 1.2e-58 230.7 255 56.5
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 1.8e-57 226.9 259 57.9
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 3.0e-57 226.1 253 55.7
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 5.1e-57 225.3 258 57.4
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 6.7e-57 224.9 242 59.5
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 1.9e-56 223.4 252 53.2
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 2.1e-55 219.9 257 56.8
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 2.8e-55 219.5 259 56.0
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 4.8e-55 218.8 260 58.1
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 4.8e-55 218.8 263 53.6
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 1.8e-54 216.9 267 55.4
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 2.6e-53 213.0 259 54.4
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 7.6e-53 211.5 254 55.9
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 9.9e-53 211.1 256 56.2
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 1.3e-52 210.7 258 53.5
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 1.3e-52 210.7 259 54.1
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 1.3e-52 210.7 252 54.0
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.2e-52 209.9 258 54.3
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 2.9e-52 209.5 256 55.9
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 3.8e-52 209.1 259 53.7
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 3.8e-52 209.1 261 54.8
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.9e-51 206.8 260 55.4
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 2.4e-51 206.5 242 56.6
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 9.3e-51 204.5 259 53.7
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 2.1e-50 203.4 245 54.3
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 3.5e-50 202.6 261 53.6
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 4.6e-50 202.2 249 53.4
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 6.0e-50 201.8 261 53.3
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 7.9e-50 201.4 250 52.0
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 1.3e-49 200.7 259 52.5
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 2.5e-48 196.4 271 52.8
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 2.5e-48 196.4 259 50.2
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 5.6e-48 195.3 243 54.3
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 7.4e-48 194.9 261 50.2
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 9.6e-48 194.5 253 51.8
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 9.6e-48 194.5 261 51.7
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 1.6e-47 193.7 265 53.6
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 2.1e-47 193.4 259 49.4
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 4.8e-47 192.2 262 52.7
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 1.1e-46 191.0 247 53.4
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 1.1e-46 191.0 249 49.8
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 2.4e-46 189.9 251 49.0
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 3.1e-46 189.5 253 51.0
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 4.0e-46 189.1 248 50.0
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.3e-46 188.7 263 51.0
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 9.0e-46 188.0 259 48.6
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 1.2e-45 187.6 253 49.4
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 1.2e-45 187.6 241 53.1
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 2.0e-45 186.8 242 54.5
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 2.6e-45 186.4 206 57.3
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 1.0e-44 184.5 259 51.0
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 1.3e-44 184.1 251 51.8
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 1.3e-44 184.1 253 51.8
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 6.5e-44 181.8 256 51.2
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 3.2e-43 179.5 263 51.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 5.5e-43 178.7 251 49.4
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 9.3e-43 177.9 251 51.4
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 1.2e-42 177.6 250 48.8
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 1.6e-42 177.2 256 46.1
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.7e-42 176.4 263 48.3
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 2.7e-42 176.4 261 48.3
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 3.5e-42 176.0 248 49.6
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 4.6e-42 175.6 267 46.4
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 1.1e-40 171.0 256 49.2
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.8e-38 163.7 208 51.9
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 6.9e-38 161.8 254 46.5
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 1.7e-36 157.1 225 48.9
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 3.8e-36 156.0 248 46.8
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 1.1e-35 154.5 244 48.0
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 4.2e-35 152.5 213 49.3
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 1.0e-33 147.9 192 47.9
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 1.0e-33 147.9 71 98.6
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 1.8e-33 147.1 202 49.5
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 8.8e-33 144.8 201 48.8
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 5.7e-32 142.1 211 46.4
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 1.3e-31 141.0 245 43.3
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 4.8e-31 139.0 250 44.4
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 1.1e-30 137.9 225 44.0
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 1.8e-30 137.1 203 49.3
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 3.1e-30 136.3 205 45.9
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 3.2e-27 126.3 203 46.3
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 7.2e-27 125.2 204 43.6
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 3.6e-26 122.9 176 51.1
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 3.6e-26 122.9 213 43.7
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 7.9e-26 121.7 218 41.3
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.4e-25 120.9 258 42.6
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 3.0e-25 119.8 251 41.0
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.1e-24 117.9 246 41.5
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.4e-24 115.9 247 40.5
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 7.4e-24 115.2 220 40.0
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 3.7e-23 112.8 248 40.7
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.8e-22 110.5 172 44.8
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.8e-22 110.5 172 44.8
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.8e-22 110.5 172 44.8
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 7.7e-21 105.1 137 53.3
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 6.5e-20 102.1 90 61.1
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 1.4e-19 100.9 171 43.3
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 1.9e-19 100.5 213 40.8
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 3.2e-19 99.8 221 44.8
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 6.1e-18 95.5 173 42.2
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.3e-15 87.8 145 46.9
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 5.3e-14 82.4 148 42.6
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 7.0e-14 82.0 239 36.0
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 3.5e-13 79.7 140 40.0
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.1e-11 74.7 247 35.6
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.5e-11 74.3 264 34.8
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.5e-11 74.3 264 34.8
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 9.4e-11 71.6 247 34.8
unitig_899.g14934 Utricularia gibba HOM05D004560 ORTHO05D037471 2.4e-06 57.0 71 57.7


User provided reference genes

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