Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0414971 Rosa chinensis HOM05D000534 ORTHO05D000389 1.4e-42 176.0 96 100.0
FvH4_6g09330 Fragaria vesca HOM05D000534 ORTHO05D000389 1.1e-15 86.7 69 76.8
FAN05G2388 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.1e-15 86.7 69 76.8
FAN14G5576 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.1e-15 86.7 69 76.8
RcHm_v2.0_Chr3g0459731 Rosa chinensis HOM05D000534 ORTHO05D000389 1.1e-15 86.7 69 76.8
FAN02G2071 Fragaria x ananassa HOM05D000534 ORTHO05D000389 7.1e-15 84.0 69 73.9
FAN09G3558 Fragaria x ananassa HOM05D000534 ORTHO05D000389 7.1e-15 84.0 69 73.9
Prupe.6G298500 Prunus persica HOM05D000534 ORTHO05D000389 1.6e-14 82.8 82 64.6
MD04G1178500 Malus domestica HOM05D000534 ORTHO05D000389 3.5e-14 81.6 69 73.9
MD12G1194000 Malus domestica HOM05D000534 ORTHO05D000389 6.0e-14 80.9 69 72.5
DCAR_023959 Daucus carota HOM05D000534 ORTHO05D000389 7.8e-14 80.5 69 69.6
CiPaw.09G224000 Carya illinoinensis HOM05D000534 ORTHO05D000389 1.3e-13 79.7 69 71.0
Cfa016994 Carpinus fangiana HOM05D000534 ORTHO05D000389 2.3e-13 79.0 69 69.6
Haze_21211 Corylus avellana HOM05D000534 ORTHO05D000389 2.3e-13 79.0 69 69.6
SalBow5G2641 Salvia bowleyana HOM05D000534 ORTHO05D000389 2.3e-13 79.0 69 68.1
Actinidia29006 Actinidia chinensis HOM05D000534 ORTHO05D000389 3.0e-13 78.6 67 68.7
Oeu026926.1 Olea europaea HOM05D000534 ORTHO05D000389 3.0e-13 78.6 69 69.6
Potri.006G112200 Populus trichocarpa HOM05D000534 ORTHO05D000389 3.0e-13 78.6 69 69.6
QL07p031389 Quercus lobata HOM05D000534 ORTHO05D000389 3.0e-13 78.6 69 71.0
Sabra06G0087500 Salix brachista HOM05D000534 ORTHO05D000389 3.9e-13 78.2 69 69.6
CSS0000275 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 5.1e-13 77.8 67 67.2
Actinidia11476 Actinidia chinensis HOM05D000534 ORTHO05D000389 6.6e-13 77.4 67 67.2
AUR62029812 Chenopodium quinoa HOM05D000534 ORTHO05D000389 6.6e-13 77.4 69 66.7
ClCG04G006110 Citrullus lanatus HOM05D000534 ORTHO05D000389 6.6e-13 77.4 69 71.0
Dinv25372 Davidia involucrata HOM05D000534 ORTHO05D000389 6.6e-13 77.4 69 69.6
ECA247G2427 Erigeron canadensis HOM05D000534 ORTHO05D000389 6.6e-13 77.4 69 68.1
Nitab4.5_0001629g0060 Nicotiana tabacum HOM05D000534 ORTHO05D000389 6.6e-13 77.4 69 68.1
Nitab4.5_0003037g0140 Nicotiana tabacum HOM05D000534 ORTHO05D000389 6.6e-13 77.4 69 68.1
Peaxi162Scf00374g00514 Petunia axillaris HOM05D000534 ORTHO05D000389 6.6e-13 77.4 69 68.1
CSS0021061 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 8.6e-13 77.0 67 68.7
Cpa.g.sc0.46 Carica papaya HOM05D000534 ORTHO05D000389 8.6e-13 77.0 69 66.7
Potri.016G141700 Populus trichocarpa HOM05D000534 ORTHO05D000389 8.6e-13 77.0 69 68.1
Solyc10g074790.2 Solanum lycopersicum HOM05D000534 ORTHO05D000389 8.6e-13 77.0 69 66.7
Sopen10g027280 Solanum pennellii HOM05D000534 ORTHO05D000389 8.6e-13 77.0 69 66.7
MSTRG.5478 Avicennia marina HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 66.7
CAN.G1754.2 Capsicum annuum HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 66.7
AUR62006456 Chenopodium quinoa HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 66.7
Migut.J00007 Erythranthe guttata HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 65.2
Gorai.011G126000 Gossypium raimondii HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 68.1
HanXRQChr10g0286211 Helianthus annuus HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 68.1
Lsat_1_v5_gn_9_39901 Lactuca sativa HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 68.1
Lj2A55G23 Lonicera japonica HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 68.1
Sed0015708 Sechium edule HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 69.6
PGSC0003DMG400027696 Solanum tuberosum HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 66.7
TPR.G24309 Trifolium pratense HOM05D000534 ORTHO05D000389 1.1e-12 76.6 69 66.7
Atru.chr8.56 Acer truncatum HOM05D000534 ORTHO05D000389 1.5e-12 76.3 69 68.1
CANSAT11G1360 Cannabis sativa HOM05D000534 ORTHO05D000389 1.5e-12 76.3 69 66.7
CANSAT11G2541 Cannabis sativa HOM05D000534 ORTHO05D000389 1.5e-12 76.3 69 66.7
CARHR212340 Cardamine hirsuta HOM05D000534 ORTHO05D000389 1.5e-12 76.3 69 66.7
MELO3C025264.2 Cucumis melo HOM05D000534 ORTHO05D000389 1.5e-12 76.3 69 69.6
CsaV3_4G027450 Cucumis sativus L. HOM05D000534 ORTHO05D000389 1.5e-12 76.3 69 69.6
Dinv16932 Davidia involucrata HOM05D000534 ORTHO05D000389 1.5e-12 76.3 67 70.1
Manes.09G121000 Manihot esculenta HOM05D000534 ORTHO05D000389 1.5e-12 76.3 69 66.7
Oeu027182.2 Olea europaea HOM05D000534 ORTHO05D000389 1.5e-12 76.3 69 66.7
Rhsim05G0234100 Rhododendron simsii HOM05D000534 ORTHO05D000389 1.5e-12 76.3 67 67.2
Sabra04G0158000 Salix brachista HOM05D000534 ORTHO05D000389 1.5e-12 76.3 67 70.1
Thecc.04G146800 Theobroma cacao HOM05D000534 ORTHO05D000389 1.5e-12 76.3 69 66.7
Ciclev10011730m.g Citrus clementina HOM05D000534 ORTHO05D000389 1.9e-12 75.9 69 65.2
Sed0024000 Sechium edule HOM05D000534 ORTHO05D000389 1.9e-12 75.9 69 68.1
Sc20g0007320 Simmondsia chinensis HOM05D000534 ORTHO05D000389 1.9e-12 75.9 69 66.7
Sc20g0007550 Simmondsia chinensis HOM05D000534 ORTHO05D000389 1.9e-12 75.9 69 66.7
Gohir.A10G152000 Gossypium hirsutum HOM05D000534 ORTHO05D000389 2.5e-12 75.5 69 66.7
Gohir.D10G114300 Gossypium hirsutum HOM05D000534 ORTHO05D000389 2.5e-12 75.5 69 66.7
CSS0006341 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 3.3e-12 75.1 67 67.2
Cc06_g00150 Coffea canephora HOM05D000534 ORTHO05D000389 3.3e-12 75.1 69 63.8
TWI53G1967 Tripterygium wilfordii HOM05D000534 ORTHO05D000389 3.3e-12 75.1 69 66.7
AL6G10040 Arabidopsis lyrata HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
AT5G01990 Arabidopsis thaliana HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
EL10Ac7g17143 Beta vulgaris HOM05D000534 ORTHO05D000389 4.3e-12 74.7 68 67.6
BcaB04g17231 Brassica carinata HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
BcaC01g01251 Brassica carinata HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
A08p03030 Brassica napus HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
C03p89790 Brassica napus HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
BolC3t21301H Brassica oleracea HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
BraA08t32337Z Brassica rapa HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
Glyma.09G271100 Glycine max HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
Glyma.18G218300 Glycine max HOM05D000534 ORTHO05D000389 4.3e-12 74.7 69 65.2
Lalb_Chr19g0123881 Lupinus albus HOM05D000534 ORTHO05D000389 4.3e-12 74.7 84 57.1
Medtr7g074190 Medicago truncatula HOM05D000534 ORTHO05D000389 5.6e-12 74.3 69 63.8
SGA_v2.0_scaffold37G14578 Striga asiatica HOM05D000534 ORTHO05D000389 5.6e-12 74.3 69 65.2
Carub.0003s3135 Capsella rubella HOM05D000534 ORTHO05D000389 7.3e-12 73.9 69 65.2
Carub.0024s0005 Capsella rubella HOM05D000534 ORTHO05D000389 7.3e-12 73.9 69 65.2
Thhalv10013614m.g Eutrema salsugineum HOM05D000534 ORTHO05D000389 7.3e-12 73.9 69 65.2
Lalb_Chr01g0023991 Lupinus albus HOM05D000534 ORTHO05D000389 7.3e-12 73.9 69 65.2
Nitab4.5_0000195g0010 Nicotiana tabacum HOM05D000534 ORTHO05D000389 7.3e-12 73.9 69 62.3
Nitab4.5_0004009g0040 Nicotiana tabacum HOM05D000534 ORTHO05D000389 7.3e-12 73.9 69 62.3
Sp1g38050 Schrenkiella parvula HOM05D000534 ORTHO05D000389 7.3e-12 73.9 69 65.2
Duzib151G0320 Durio zibethinus HOM05D000534 ORTHO05D000389 9.6e-12 73.6 67 65.7
TWI77G0231 Tripterygium wilfordii HOM05D000534 ORTHO05D000389 9.6e-12 73.6 67 64.2
arahy.Tifrunner.gnm1.ann1.QNPC7T Arachis hypogaea HOM05D000534 ORTHO05D000389 1.2e-11 73.2 69 65.2
arahy.Tifrunner.gnm1.ann1.YKZY74 Arachis hypogaea HOM05D000534 ORTHO05D000389 1.2e-11 73.2 69 65.2
Gohir.D02G001600 Gossypium hirsutum HOM05D000534 ORTHO05D000389 1.2e-11 73.2 69 63.8
Gorai.005G002100 Gossypium raimondii HOM05D000534 ORTHO05D000389 1.2e-11 73.2 69 63.8
Psat3g117040 Pisum sativum HOM05D000534 ORTHO05D000389 1.2e-11 73.2 69 63.8
Rhsim04G0120300 Rhododendron simsii HOM05D000534 ORTHO05D000389 1.2e-11 73.2 65 67.7
BcaB02g11241 Brassica carinata HOM05D000534 ORTHO05D000389 1.6e-11 72.8 69 63.8
A05p19590 Brassica napus HOM05D000534 ORTHO05D000389 1.6e-11 72.8 69 63.8
C05p32590 Brassica napus HOM05D000534 ORTHO05D000389 1.6e-11 72.8 69 63.8
BraA05t20863Z Brassica rapa HOM05D000534 ORTHO05D000389 1.6e-11 72.8 69 63.8
MBI15_g31020_MAGBIO Magnolia biondii HOM05D000534 ORTHO05D000389 1.6e-11 72.8 69 63.8
PGR004G1380 Punica granatum HOM05D000534 ORTHO05D000389 1.6e-11 72.8 69 63.8
vmacro08957 Vaccinium macrocarpon HOM05D000534 ORTHO05D000389 1.6e-11 72.8 65 66.2
vmacro20399 Vaccinium macrocarpon HOM05D000534 ORTHO05D000389 1.6e-11 72.8 65 67.7
VMungo1383G0880 Vigna mungo HOM05D000534 ORTHO05D000389 1.6e-11 72.8 69 60.9
TAR636G1615 Trochodendron aralioides HOM05D000534 ORTHO05D000389 2.1e-11 72.4 69 62.3
Phvul.008G078601 Phaseolus vulgaris HOM05D000534 ORTHO05D000389 2.8e-11 72.0 69 60.9
Aa31LG5G11300 Aethionema arabicum HOM05D000534 ORTHO05D000389 3.6e-11 71.6 67 64.2
Lj1g0004424 Lotus japonicus HOM05D000534 ORTHO05D000389 3.6e-11 71.6 69 62.3
Nn5g26769 Nelumbo nucifera HOM05D000534 ORTHO05D000389 3.6e-11 71.6 69 62.3
Hund03683 Selenicereus undatus HOM05D000534 ORTHO05D000389 3.6e-11 71.6 69 62.3
TAR369G0515 Trochodendron aralioides HOM05D000534 ORTHO05D000389 3.6e-11 71.6 93 53.8
TAR623G0868 Trochodendron aralioides HOM05D000534 ORTHO05D000389 3.6e-11 71.6 68 63.2
HPP92_019764 Vanilla planifolia HOM05D000534 ORTHO05D000389 3.6e-11 71.6 68 63.2
ATR1127G075 Amborella trichopoda HOM05D000534 ORTHO05D000389 4.7e-11 71.2 69 63.8
Aqoxy4G03317 Aquilegia oxysepala HOM05D000534 ORTHO05D000389 4.7e-11 71.2 68 61.8
BcaC05g27338 Brassica carinata HOM05D000534 ORTHO05D000389 4.7e-11 71.2 69 62.3
CDE06G0403 Ceratophyllum demersum HOM05D000534 ORTHO05D000389 4.7e-11 71.2 69 60.9
CDE07G1030 Ceratophyllum demersum HOM05D000534 ORTHO05D000389 4.7e-11 71.2 69 62.3
Zm00001eb149720 Zea mays HOM05D000534 ORTHO05D000389 6.2e-11 70.9 69 62.3
Os01g0818000 Oryza sativa ssp. japonica HOM05D000534 ORTHO05D000389 2.4e-10 68.9 66 63.6
PSO339G4487 Papaver somniferum HOM05D000534 ORTHO05D000389 4.0e-10 68.2 69 59.4
PSO384G0733 Papaver somniferum HOM05D000534 ORTHO05D000389 4.0e-10 68.2 69 59.4
HPP92_014357 Vanilla planifolia HOM05D000534 ORTHO05D000389 4.0e-10 68.2 69 60.9
Gohir.A02G001350 Gossypium hirsutum HOM05D000534 ORTHO05D000389 8.9e-10 67.0 63 66.7
THA.LOC104816150 Tarenaya hassleriana HOM05D000534 ORTHO05D000389 1.5e-09 66.2 77 58.4
Os05g0481900 Oryza sativa ssp. japonica HOM05D000534 ORTHO05D000389 4.9e-08 61.2 69 55.1
BcaNung05692 Brassica carinata HOM05D000534 ORTHO05D000389 1.9e-07 59.3 63 58.7
SEGI_01192 Sequoiadendron giganteum HOM05D000534 ORTHO05D000389 2.4e-07 58.9 69 49.3
SEGI_11342 Sequoiadendron giganteum HOM05D000534 ORTHO05D000389 2.4e-07 58.9 70 50.0
GSVIVG01029853001 Vitis vinifera HOM05D000534 ORTHO05D000389 4.2e-07 58.2 50 66.0
SEGI_40371 Sequoiadendron giganteum HOM05D000534 ORTHO05D000389 5.4e-07 57.8 66 51.5


User provided reference genes

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